MitoAge

Coregonus clupeaformis

Lake whitefish

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Maximum lifespan
50 yr
AnAge record
mtDNA size
16,744 bp
RefSeq NC_020762.1
GC content
47.59%
Whole genome
Non-coding
1,151 bp
D-loop 1,083 bp

Where Lake whitefish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Lake whitefish has the 136th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Lake whitefish
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,744 bp
GC skew (G − C) / (G + C)
−0.238
AT skew (A − T) / (A + T)
+0.020

Life history

Maximum lifespan
50 years
Adult weight
10.5 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04448)

About this record

Lifespan source
AnAge build 15
Based on
an observed animal, origin not stated
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,744 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,556 bp
D-loop1,083 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp22.6%28.1%18.3%31.1%49.33%−0.260−0.109
ND2NADH dehydrogenase subunit 21,050 bp26.6%25.2%14.9%33.3%48.19%−0.383+0.026
COX1Cytochrome c oxidase subunit I1,551 bp22.6%29.6%19.8%28.0%47.84%−0.173−0.135
COX2Cytochrome c oxidase subunit II691 bp26.8%28.2%16.9%28.1%45.01%−0.248−0.026
ATP8ATP synthase F0 subunit 8168 bp28.0%23.8%13.7%34.5%48.21%−0.432+0.080
ATP6ATP synthase F0 subunit 6684 bp25.0%27.2%14.3%33.5%47.81%−0.401−0.042
COX3Cytochrome c oxidase subunit III785 bp23.6%27.9%17.7%30.8%48.54%−0.270−0.084
ND3NADH dehydrogenase subunit 3349 bp22.6%28.9%16.6%31.8%48.42%−0.314−0.122
ND4LNADH dehydrogenase subunit 4L297 bp22.9%25.9%18.2%33.0%51.18%−0.289−0.062
ND4NADH dehydrogenase subunit 41,381 bp26.0%26.7%16.1%31.2%47.29%−0.320−0.014
ND5NADH dehydrogenase subunit 51,839 bp26.0%26.5%16.0%31.4%47.42%−0.323−0.009
ND6NADH dehydrogenase subunit 6522 bp36.0%12.6%15.7%35.6%51.34%−0.388+0.480
CYTBCytochrome b1,141 bp24.1%28.1%16.8%30.9%47.77%−0.295−0.077
12S rRNA12S ribosomal RNA947 bp29.3%20.6%23.1%27.0%50.16%−0.078+0.174
16S rRNA16S ribosomal RNA1,679 bp31.7%19.4%23.3%25.6%48.90%−0.045+0.242
D-loopControl region (D-loop)1,083 bp30.5%30.0%15.0%24.6%39.52%−0.243+0.008

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU109
UUC115
Leu L17.1%
UUA66
UUG36
CUU169
CUC132
CUA174
CUG74
Ile I6.7%
AUU122
AUC135
Met M4.1%
AUA93
AUG64
Val V6.4%
GUU66
GUC75
GUA60
GUG42
Ser S6.3%
UCU49
UCC65
UCA60
UCG10
AGU9
AGC46
Pro P5.6%
CCU35
CCC112
CCA51
CCG16
Thr T8.0%
ACU49
ACC130
ACA103
ACG21
Ala A9.3%
GCU60
GCC181
GCA97
GCG16
Tyr Y2.9%
UAU41
UAC69
His H2.8%
CAU24
CAC81
Gln Q2.6%
CAA74
CAG25
Asn N2.9%
AAU39
AAC73
Lys K2.0%
AAA46
AAG29
Asp D2.1%
GAU34
GAC45
Glu E2.7%
GAA71
GAG32
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA97
UGG26
Arg R2.0%
CGU8
CGC10
CGA43
CGG16
Gly G6.5%
GGU40
GGC81
GGA70
GGG58
Stop 0.2%
UAA7
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_020762.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,015947 bp+50.2%
tRNA-ValTransfer RNA1,0161,08772 bp+–
16S rRNARibosomal RNA1,0882,7661,679 bp+48.9%
tRNA-Leu (UUR)Transfer RNA2,7672,84175 bp+–
ND1Protein-coding gene2,8423,816975 bp+49.3%
tRNA-IleTransfer RNA3,8243,89572 bp+–
tRNA-GlnTransfer RNA3,8933,96371 bp−–
tRNA-MetTransfer RNA3,9634,03169 bp+–
ND2Protein-coding gene4,0325,0811,050 bp+48.2%
tRNA-TrpTransfer RNA5,0835,15472 bp+–
tRNA-AlaTransfer RNA5,1565,22469 bp−–
tRNA-AsnTransfer RNA5,2265,29873 bp−–
tRNA-CysTransfer RNA5,3335,40068 bp−–
tRNA-TyrTransfer RNA5,4015,47070 bp−–
COX1Protein-coding gene5,4727,0221,551 bp+47.8%
tRNA-Ser (UCN)Transfer RNA7,0237,09371 bp−–
tRNA-AspTransfer RNA7,0987,17174 bp+–
COX2Protein-coding gene7,1867,876691 bp+45.0%
tRNA-LysTransfer RNA7,8777,95074 bp+–
ATP8Protein-coding gene7,9528,119168 bp+48.2%
ATP6Protein-coding gene8,1108,793684 bp+47.8%
COX3Protein-coding gene8,7939,577785 bp+48.5%
tRNA-GlyTransfer RNA9,5789,64770 bp+–
ND3Protein-coding gene9,6489,996349 bp+48.4%
tRNA-ArgTransfer RNA9,99710,06771 bp+–
ND4LProtein-coding gene10,06810,364297 bp+51.2%
ND4Protein-coding gene10,35811,7381,381 bp+47.3%
tRNA-HisTransfer RNA11,73911,80769 bp+–
tRNA-Ser (AGY)Transfer RNA11,80811,87669 bp+–
tRNA-Leu (CUN)Transfer RNA11,87811,95073 bp+–
ND5Protein-coding gene11,95113,7891,839 bp+47.4%
ND6Protein-coding gene13,78614,307522 bp−51.3%
tRNA-GluTransfer RNA14,30814,37669 bp−–
CYTBProtein-coding gene14,38015,5201,141 bp+47.8%
tRNA-ThrTransfer RNA15,52115,59272 bp+–
tRNA-ProTransfer RNA15,59215,66170 bp−–
D-loopControl region15,66216,7441,083 bp–39.5%

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