Coregonus hoyi
Bloater
GC content
47.00%
Whole genome
Non-coding
1,229 bp
D-loop 1,160 bp
Where Bloater sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bloater has the 1,584th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,820 bp
- GC skew (G − C) / (G + C)
- −0.230
- AT skew (A − T) / (A + T)
- +0.013
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,820 bp
Protein-coding11,410 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,555 bp
D-loop1,160 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.23% | −0.250 | −0.123 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 47.62% | −0.340 | −0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.29% | −0.173 | −0.140 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.44% | −0.268 | −0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.432 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.64% | −0.398 | −0.036 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 47.83% | −0.253 | −0.090 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.302 | −0.111 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.54% | −0.270 | −0.072 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.71% | −0.305 | −0.022 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.77% | −0.328 | −0.011 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 51.34% | −0.373 | +0.457 | |||||
| CYTBCytochrome b | 1,141 bp | 46.45% | −0.260 | −0.100 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 50.26% | −0.080 | +0.176 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 48.72% | −0.039 | +0.240 | |||||
| D-loopControl region (D-loop) | 1,160 bp | 38.28% | −0.243 | +0.011 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU111
UUC115
Leu L17.0%
UUA75
UUG28
CUU179
CUC122
CUA166
CUG78
Ile I6.6%
AUU129
AUC123
Met M4.2%
AUA104
AUG55
Val V6.5%
GUU72
GUC70
GUA67
GUG39
Ser S6.3%
UCU48
UCC64
UCA64
UCG9
AGU9
AGC46
Pro P5.6%
CCU37
CCC106
CCA52
CCG18
Thr T8.1%
ACU54
ACC129
ACA103
ACG21
Ala A9.1%
GCU62
GCC172
GCA97
GCG17
Tyr Y2.9%
UAU46
UAC64
His H2.8%
CAU25
CAC80
Gln Q2.6%
CAA72
CAG27
Asn N3.0%
AAU44
AAC69
Lys K2.0%
AAA51
AAG24
Asp D2.1%
GAU37
GAC43
Glu E2.7%
GAA62
GAG40
Cys C0.7%
UGU12
UGC15
Trp W3.2%
UGA92
UGG31
Arg R2.0%
CGU8
CGC9
CGA42
CGG18
Gly G6.5%
GGU46
GGC73
GGA69
GGG61
Stop 0.2%
UAA6
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_054288.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 50.3% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,766 | 1,679 bp | + | 48.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,767 | 2,841 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,842 | 3,816 | 975 bp | + | 49.2% |
| tRNA-Ile | Transfer RNA | 3,824 | 3,895 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,893 | 3,963 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,963 | 4,031 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,032 | 5,081 | 1,050 bp | + | 47.6% |
| tRNA-Trp | Transfer RNA | 5,083 | 5,154 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,156 | 5,224 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,226 | 5,298 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,333 | 5,400 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,470 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,472 | 7,022 | 1,551 bp | + | 46.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,023 | 7,093 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,171 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 45.4% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 46.6% |
| COX3 | Protein-coding gene | 8,793 | 9,576 | 784 bp | + | 47.8% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,647 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,066 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 53.5% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 46.7% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,875 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,949 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,950 | 13,788 | 1,839 bp | + | 46.8% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 51.3% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 46.5% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |
| D-loop | Control region | 15,661 | 16,820 | 1,160 bp | – | 38.3% |