Coregonus lavaretus
European whitefish
GC content
47.57%
Whole genome
Non-coding
1,145 bp
D-loop 1,076 bp
Where European whitefish sits among 2,335 species
Whole-genome GC content against maximum lifespan. European whitefish has the 1,236th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,737 bp
- GC skew (G − C) / (G + C)
- −0.239
- AT skew (A − T) / (A + T)
- +0.020
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,737 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,555 bp
D-loop1,076 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.62% | −0.278 | −0.106 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 49.24% | −0.362 | +0.009 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.71% | −0.170 | −0.132 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.59% | −0.251 | −0.021 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.432 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.52% | −0.391 | −0.047 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.66% | −0.267 | −0.087 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.00% | −0.322 | −0.112 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.52% | −0.307 | −0.056 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.85% | −0.335 | −0.005 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.87% | −0.334 | −0.005 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 51.15% | −0.386 | +0.475 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.284 | −0.086 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 50.37% | −0.082 | +0.174 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 48.84% | −0.041 | +0.241 | |||||
| D-loopControl region (D-loop) | 1,076 bp | 39.13% | −0.240 | +0.008 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU109
UUC116
Leu L17.1%
UUA64
UUG36
CUU173
CUC130
CUA175
CUG72
Ile I6.7%
AUU126
AUC130
Met M4.1%
AUA90
AUG66
Val V6.4%
GUU64
GUC77
GUA64
GUG40
Ser S6.2%
UCU49
UCC65
UCA62
UCG8
AGU8
AGC46
Pro P5.6%
CCU33
CCC112
CCA50
CCG18
Thr T8.0%
ACU48
ACC134
ACA106
ACG18
Ala A9.2%
GCU60
GCC179
GCA97
GCG15
Tyr Y2.9%
UAU41
UAC70
His H2.8%
CAU23
CAC82
Gln Q2.6%
CAA74
CAG25
Asn N3.0%
AAU39
AAC74
Lys K2.0%
AAA51
AAG24
Asp D2.1%
GAU31
GAC48
Glu E2.7%
GAA69
GAG34
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA95
UGG28
Arg R2.0%
CGU9
CGC10
CGA41
CGG17
Gly G6.5%
GGU42
GGC81
GGA67
GGG59
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_002646.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 50.4% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,766 | 1,679 bp | + | 48.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,767 | 2,841 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,842 | 3,816 | 975 bp | + | 48.6% |
| tRNA-Ile | Transfer RNA | 3,824 | 3,895 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,893 | 3,963 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,963 | 4,031 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,032 | 5,081 | 1,050 bp | + | 49.2% |
| tRNA-Trp | Transfer RNA | 5,083 | 5,154 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,156 | 5,224 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,226 | 5,298 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,333 | 5,400 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,470 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,472 | 7,022 | 1,551 bp | + | 47.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,023 | 7,093 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,171 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 45.6% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 47.5% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 48.7% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,647 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,067 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 51.5% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 46.9% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,876 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,878 | 11,950 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,951 | 13,789 | 1,839 bp | + | 46.9% |
| ND6 | Protein-coding gene | 13,786 | 14,307 | 522 bp | − | 51.2% |
| tRNA-Glu | Transfer RNA | 14,308 | 14,375 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,592 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,592 | 15,661 | 70 bp | − | – |
| D-loop | Control region | 15,662 | 16,737 | 1,076 bp | – | 39.1% |