Coregonus muksun

Muksun

Maximum lifespan

23 yr

AnAge record

mtDNA size

16,736 bp

RefSeq NC_028593.1

GC content

47.51%

Whole genome

Non-coding

1,144 bp

D-loop 1,075 bp

Where Muksun sits among 2,335 species

Whole-genome GC content against maximum lifespan. Muksun has the 742nd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,736 bp

GC skew (G − C) / (G + C): −0.241
AT skew (A − T) / (A + T): +0.022

Life history

Maximum lifespan: 23 years
Adult weight: 7.6 kg

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04451)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,736 bp

Protein-coding11,411 bp

12S rRNA947 bp

16S rRNA1,679 bp

All tRNA1,555 bp

D-loop1,075 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Coregonus muksun genes

ND1NADH dehydrogenase subunit 1	975 bp	22.9%	28.1%	17.6%	31.4%	49.03%	−0.280	−0.103
ND2NADH dehydrogenase subunit 2	1,050 bp	25.8%	25.1%	15.5%	33.5%	49.05%	−0.367	+0.013
COX1Cytochrome c oxidase subunit I	1,551 bp	22.8%	29.5%	19.7%	28.0%	47.65%	−0.175	−0.128
COX2Cytochrome c oxidase subunit II	691 bp	26.5%	27.8%	17.2%	28.5%	45.73%	−0.247	−0.024
ATP8ATP synthase F0 subunit 8	168 bp	28.0%	23.8%	13.7%	34.5%	48.21%	−0.432	+0.080
ATP6ATP synthase F0 subunit 6	684 bp	25.1%	27.3%	14.3%	33.2%	47.52%	−0.397	−0.042
COX3Cytochrome c oxidase subunit III	785 bp	23.6%	28.0%	17.8%	30.6%	48.41%	−0.263	−0.086
ND3NADH dehydrogenase subunit 3	349 bp	21.8%	28.7%	17.5%	32.1%	49.57%	−0.295	−0.136
ND4LNADH dehydrogenase subunit 4L	297 bp	23.6%	25.6%	17.5%	33.3%	50.84%	−0.311	−0.041
ND4NADH dehydrogenase subunit 4	1,381 bp	26.6%	26.8%	15.5%	31.1%	46.63%	−0.335	−0.004
ND5NADH dehydrogenase subunit 5	1,839 bp	26.5%	26.7%	15.6%	31.3%	46.82%	−0.336	−0.004
ND6NADH dehydrogenase subunit 6	522 bp	35.8%	12.6%	15.7%	35.8%	51.53%	−0.390	+0.478
CYTBCytochrome b	1,141 bp	23.8%	28.3%	17.0%	30.9%	47.85%	−0.289	−0.086
12S rRNA12S ribosomal RNA	947 bp	29.3%	20.5%	23.0%	27.2%	50.26%	−0.084	+0.176
16S rRNA16S ribosomal RNA	1,679 bp	31.8%	19.4%	23.4%	25.4%	48.84%	−0.041	+0.243
D-loopControl region (D-loop)	1,075 bp	30.7%	30.0%	14.9%	24.4%	39.26%	−0.242	+0.011

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU108

UUC117

Leu L17.1%

UUA65

UUG35

CUU174

CUC130

CUA172

CUG74

Ile I6.7%

AUU126

AUC131

Met M4.0%

AUA91

AUG63

Val V6.4%

GUU65

GUC76

GUA66

GUG38

Ser S6.2%

UCU49

UCC65

UCA62

UCG8

AGU8

AGC46

Pro P5.6%

CCU32

CCC113

CCA50

CCG18

Thr T8.0%

ACU49

ACC132

ACA106

ACG19

Ala A9.2%

GCU60

GCC180

GCA99

GCG13

Tyr Y2.9%

UAU41

UAC70

His H2.8%

CAU25

CAC80

Gln Q2.6%

CAA75

CAG24

Asn N3.0%

AAU39

AAC74

Lys K2.0%

AAA52

AAG23

Asp D2.1%

GAU32

GAC47

Glu E2.7%

GAA69

GAG34

Cys C0.7%

UGU13

UGC14

Trp W3.2%

UGA97

UGG26

Arg R2.0%

CGU8

CGC10

CGA42

CGG17

Gly G6.5%

GGU39

GGC80

GGA67

GGG63

Stop 0.2%

UAA7

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_028593.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Coregonus muksun (NC_028593.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	50.3%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,766	1,679 bp	+	48.8%
tRNA-Leu (UUR)	Transfer RNA	2,767	2,841	75 bp	+	–
ND1	Protein-coding gene	2,842	3,816	975 bp	+	49.0%
tRNA-Ile	Transfer RNA	3,824	3,895	72 bp	+	–
tRNA-Gln	Transfer RNA	3,893	3,963	71 bp	−	–
tRNA-Met	Transfer RNA	3,963	4,031	69 bp	+	–
ND2	Protein-coding gene	4,032	5,081	1,050 bp	+	49.1%
tRNA-Trp	Transfer RNA	5,083	5,154	72 bp	+	–
tRNA-Ala	Transfer RNA	5,156	5,224	69 bp	−	–
tRNA-Asn	Transfer RNA	5,226	5,298	73 bp	−	–
tRNA-Cys	Transfer RNA	5,333	5,400	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,401	5,470	70 bp	−	–
COX1	Protein-coding gene	5,472	7,022	1,551 bp	+	47.7%
tRNA-Ser (UCN)	Transfer RNA	7,023	7,093	71 bp	−	–
tRNA-Asp	Transfer RNA	7,098	7,171	74 bp	+	–
COX2	Protein-coding gene	7,186	7,876	691 bp	+	45.7%
tRNA-Lys	Transfer RNA	7,877	7,950	74 bp	+	–
ATP8	Protein-coding gene	7,952	8,119	168 bp	+	48.2%
ATP6	Protein-coding gene	8,110	8,793	684 bp	+	47.5%
COX3	Protein-coding gene	8,793	9,577	785 bp	+	48.4%
tRNA-Gly	Transfer RNA	9,578	9,647	70 bp	+	–
ND3	Protein-coding gene	9,648	9,996	349 bp	+	49.6%
tRNA-Arg	Transfer RNA	9,997	10,067	71 bp	+	–
ND4L	Protein-coding gene	10,068	10,364	297 bp	+	50.8%
ND4	Protein-coding gene	10,358	11,738	1,381 bp	+	46.6%
tRNA-His	Transfer RNA	11,739	11,807	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,808	11,876	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,950	73 bp	+	–
ND5	Protein-coding gene	11,951	13,789	1,839 bp	+	46.8%
ND6	Protein-coding gene	13,786	14,307	522 bp	−	51.5%
tRNA-Glu	Transfer RNA	14,308	14,375	68 bp	−	–
CYTB	Protein-coding gene	14,380	15,520	1,141 bp	+	47.9%
tRNA-Thr	Transfer RNA	15,521	15,592	72 bp	+	–
tRNA-Pro	Transfer RNA	15,592	15,661	70 bp	−	–
D-loop	Control region	15,662	16,736	1,075 bp	–	39.3%