Coregonus nasus

Broad whitefish

Maximum lifespan

15 yr

AnAge record

mtDNA size

16,739 bp

RefSeq NC_020760.1

GC content

47.51%

Whole genome

Non-coding

1,146 bp

D-loop 1,078 bp

Where Broad whitefish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Broad whitefish has the 1,215th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,739 bp

GC skew (G − C) / (G + C): −0.237
AT skew (A − T) / (A + T): +0.022

Life history

Maximum lifespan: 15 years
Adult weight: 8.8 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04452)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,739 bp

Protein-coding11,411 bp

12S rRNA947 bp

16S rRNA1,679 bp

All tRNA1,556 bp

D-loop1,078 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Coregonus nasus genes

ND1NADH dehydrogenase subunit 1	975 bp	23.1%	28.3%	17.9%	30.7%	48.62%	−0.262	−0.102
ND2NADH dehydrogenase subunit 2	1,050 bp	26.0%	25.3%	15.5%	33.1%	48.67%	−0.362	+0.013
COX1Cytochrome c oxidase subunit I	1,551 bp	22.8%	29.7%	19.7%	27.9%	47.58%	−0.173	−0.132
COX2Cytochrome c oxidase subunit II	691 bp	27.2%	27.8%	16.5%	28.5%	45.01%	−0.267	−0.011
ATP8ATP synthase F0 subunit 8	168 bp	28.0%	23.2%	13.7%	35.1%	48.81%	−0.439	+0.093
ATP6ATP synthase F0 subunit 6	684 bp	25.0%	27.2%	14.5%	33.3%	47.81%	−0.395	−0.042
COX3Cytochrome c oxidase subunit III	785 bp	23.1%	27.8%	18.2%	31.0%	49.17%	−0.259	−0.093
ND3NADH dehydrogenase subunit 3	349 bp	22.3%	28.9%	16.6%	32.1%	48.71%	−0.318	−0.128
ND4LNADH dehydrogenase subunit 4L	297 bp	23.2%	25.6%	17.8%	33.3%	51.18%	−0.303	−0.048
ND4NADH dehydrogenase subunit 4	1,381 bp	26.4%	26.6%	15.9%	31.1%	47.00%	−0.322	−0.005
ND5NADH dehydrogenase subunit 5	1,839 bp	26.3%	26.8%	15.7%	31.2%	46.93%	−0.330	−0.010
ND6NADH dehydrogenase subunit 6	522 bp	36.4%	12.6%	15.5%	35.4%	50.96%	−0.391	+0.484
CYTBCytochrome b	1,141 bp	23.8%	28.0%	17.4%	30.8%	48.20%	−0.276	−0.083
12S rRNA12S ribosomal RNA	947 bp	29.1%	20.3%	23.2%	27.3%	50.58%	−0.081	+0.179
16S rRNA16S ribosomal RNA	1,679 bp	31.8%	19.3%	23.3%	25.6%	48.90%	−0.045	+0.245
D-loopControl region (D-loop)	1,078 bp	30.8%	30.3%	14.9%	23.9%	38.87%	−0.232	+0.008

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU113

UUC115

Leu L17.0%

UUA65

UUG33

CUU174

CUC125

CUA175

CUG75

Ile I6.7%

AUU119

AUC137

Met M4.1%

AUA93

AUG64

Val V6.4%

GUU69

GUC71

GUA65

GUG40

Ser S6.3%

UCU50

UCC63

UCA64

UCG8

AGU8

AGC48

Pro P5.6%

CCU35

CCC110

CCA49

CCG18

Thr T8.0%

ACU49

ACC128

ACA108

ACG18

Ala A9.3%

GCU57

GCC182

GCA97

GCG17

Tyr Y2.9%

UAU41

UAC69

His H2.8%

CAU20

CAC85

Gln Q2.6%

CAA77

CAG22

Asn N2.9%

AAU40

AAC70

Lys K2.0%

AAA51

AAG24

Asp D2.1%

GAU29

GAC51

Glu E2.7%

GAA68

GAG36

Cys C0.7%

UGU12

UGC15

Trp W3.2%

UGA92

UGG31

Arg R2.0%

CGU8

CGC10

CGA40

CGG20

Gly G6.5%

GGU44

GGC78

GGA70

GGG56

Stop 0.2%

UAA6

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_020760.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Coregonus nasus (NC_020760.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	50.6%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,766	1,679 bp	+	48.9%
tRNA-Leu (UUR)	Transfer RNA	2,767	2,841	75 bp	+	–
ND1	Protein-coding gene	2,842	3,816	975 bp	+	48.6%
tRNA-Ile	Transfer RNA	3,824	3,895	72 bp	+	–
tRNA-Gln	Transfer RNA	3,893	3,963	71 bp	−	–
tRNA-Met	Transfer RNA	3,963	4,031	69 bp	+	–
ND2	Protein-coding gene	4,032	5,081	1,050 bp	+	48.7%
tRNA-Trp	Transfer RNA	5,083	5,154	72 bp	+	–
tRNA-Ala	Transfer RNA	5,156	5,224	69 bp	−	–
tRNA-Asn	Transfer RNA	5,226	5,298	73 bp	−	–
tRNA-Cys	Transfer RNA	5,333	5,400	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,401	5,470	70 bp	−	–
COX1	Protein-coding gene	5,472	7,022	1,551 bp	+	47.6%
tRNA-Ser (UCN)	Transfer RNA	7,023	7,093	71 bp	−	–
tRNA-Asp	Transfer RNA	7,098	7,171	74 bp	+	–
COX2	Protein-coding gene	7,186	7,876	691 bp	+	45.0%
tRNA-Lys	Transfer RNA	7,877	7,950	74 bp	+	–
ATP8	Protein-coding gene	7,952	8,119	168 bp	+	48.8%
ATP6	Protein-coding gene	8,110	8,793	684 bp	+	47.8%
COX3	Protein-coding gene	8,793	9,577	785 bp	+	49.2%
tRNA-Gly	Transfer RNA	9,578	9,647	70 bp	+	–
ND3	Protein-coding gene	9,648	9,996	349 bp	+	48.7%
tRNA-Arg	Transfer RNA	9,997	10,067	71 bp	+	–
ND4L	Protein-coding gene	10,068	10,364	297 bp	+	51.2%
ND4	Protein-coding gene	10,358	11,738	1,381 bp	+	47.0%
tRNA-His	Transfer RNA	11,739	11,807	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,808	11,876	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,950	73 bp	+	–
ND5	Protein-coding gene	11,951	13,789	1,839 bp	+	46.9%
ND6	Protein-coding gene	13,786	14,307	522 bp	−	51.0%
tRNA-Glu	Transfer RNA	14,308	14,376	69 bp	−	–
CYTB	Protein-coding gene	14,380	15,520	1,141 bp	+	48.2%
tRNA-Thr	Transfer RNA	15,521	15,592	72 bp	+	–
tRNA-Pro	Transfer RNA	15,592	15,661	70 bp	−	–
D-loop	Control region	15,662	16,739	1,078 bp	–	38.9%