Coregonus ussuriensis
Amur whitefish
GC content
47.56%
Whole genome
Non-coding
1,143 bp
D-loop 1,074 bp
Where Amur whitefish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Amur whitefish has the 1,606th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,737 bp
- GC skew (G − C) / (G + C)
- −0.239
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,737 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,679 bp
All tRNA1,558 bp
D-loop1,074 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.276 | −0.112 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,050 bp | 49.14% | −0.360 | +0.011 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.65% | −0.169 | −0.131 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.59% | −0.251 | −0.021 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.432 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.37% | −0.395 | −0.044 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.54% | −0.270 | −0.089 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.71% | −0.329 | −0.106 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.303 | −0.048 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.85% | −0.335 | −0.003 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.09% | −0.333 | −0.003 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 51.92% | −0.380 | +0.466 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.284 | −0.086 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 50.37% | −0.082 | +0.174 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 48.90% | −0.043 | +0.242 | |||||
| D-loopControl region (D-loop) | 1,074 bp | 39.20% | −0.230 | +0.008 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU109
UUC116
Leu L17.0%
UUA66
UUG32
CUU171
CUC131
CUA173
CUG76
Ile I6.7%
AUU127
AUC130
Met M4.1%
AUA92
AUG64
Val V6.4%
GUU64
GUC76
GUA65
GUG40
Ser S6.2%
UCU49
UCC63
UCA63
UCG9
AGU8
AGC46
Pro P5.6%
CCU33
CCC112
CCA50
CCG18
Thr T8.0%
ACU50
ACC134
ACA105
ACG17
Ala A9.2%
GCU60
GCC179
GCA98
GCG14
Tyr Y2.9%
UAU40
UAC70
His H2.8%
CAU24
CAC81
Gln Q2.6%
CAA75
CAG24
Asn N2.9%
AAU38
AAC74
Lys K2.0%
AAA50
AAG25
Asp D2.1%
GAU31
GAC50
Glu E2.7%
GAA69
GAG34
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA94
UGG29
Arg R2.0%
CGU7
CGC10
CGA41
CGG19
Gly G6.5%
GGU41
GGC82
GGA67
GGG59
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_025648.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 50.4% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,766 | 1,679 bp | + | 48.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,766 | 2,840 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,841 | 3,815 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 3,823 | 3,894 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,892 | 3,962 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,962 | 4,030 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,031 | 5,080 | 1,050 bp | + | 49.1% |
| tRNA-Trp | Transfer RNA | 5,082 | 5,153 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,155 | 5,223 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,225 | 5,297 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,332 | 5,401 | 70 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,472 | 72 bp | − | – |
| COX1 | Protein-coding gene | 5,474 | 7,024 | 1,551 bp | + | 47.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,025 | 7,095 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,100 | 7,173 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,188 | 7,878 | 691 bp | + | 45.6% |
| tRNA-Lys | Transfer RNA | 7,879 | 7,952 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,954 | 8,121 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,112 | 8,795 | 684 bp | + | 47.4% |
| COX3 | Protein-coding gene | 8,795 | 9,579 | 785 bp | + | 48.5% |
| tRNA-Gly | Transfer RNA | 9,580 | 9,649 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 48.7% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,069 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,070 | 10,366 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,360 | 11,740 | 1,381 bp | + | 46.9% |
| tRNA-His | Transfer RNA | 11,741 | 11,809 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,810 | 11,878 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,791 | 1,839 bp | + | 47.1% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 51.9% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,377 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,382 | 15,522 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,523 | 15,594 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,594 | 15,663 | 70 bp | − | – |
| D-loop | Control region | 15,664 | 16,737 | 1,074 bp | – | 39.2% |