Coryphaena equiselis
Pompano dolphin
GC content
41.13%
Whole genome
Non-coding
1,044 bp
D-loop 1 bp
Where Pompano dolphin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pompano dolphin has the 2,087th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,659 bp
- GC skew (G − C) / (G + C)
- −0.195
- AT skew (A − T) / (A + T)
- −0.020
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,659 bp
Protein-coding11,406 bp
12S rRNA946 bp
16S rRNA1,719 bp
All tRNA1,549 bp
D-loop1 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 44.34% | −0.207 | −0.168 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 42.58% | −0.272 | −0.100 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 42.09% | −0.147 | −0.062 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.96% | −0.223 | −0.039 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 36.91% | −0.484 | +0.094 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.64% | −0.331 | −0.059 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 42.29% | −0.193 | −0.029 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.69% | −0.235 | −0.170 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.300 | −0.299 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.94% | −0.241 | −0.114 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.71% | −0.280 | −0.067 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.49% | −0.269 | +0.336 | |||||
| CYTBCytochrome b | 1,141 bp | 44.35% | −0.304 | −0.134 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 44.08% | −0.046 | +0.130 | |||||
| 16S rRNA16S ribosomal RNA | 1,719 bp | 41.01% | −0.058 | +0.176 | |||||
| D-loopControl region (D-loop) | 1 bp | 0.00% | – | +1.000 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.9%
UUU134
UUC130
Leu L16.9%
UUA152
UUG37
CUU149
CUC99
CUA148
CUG59
Ile I7.4%
AUU171
AUC109
Met M4.2%
AUA85
AUG74
Val V6.0%
GUU77
GUC47
GUA91
GUG15
Ser S6.9%
UCU70
UCC37
UCA81
UCG20
AGU15
AGC39
Pro P5.5%
CCU82
CCC51
CCA61
CCG16
Thr T8.0%
ACU99
ACC70
ACA115
ACG19
Ala A8.5%
GCU106
GCC106
GCA92
GCG18
Tyr Y2.9%
UAU32
UAC79
His H2.6%
CAU40
CAC58
Gln Q2.5%
CAA73
CAG21
Asn N2.9%
AAU41
AAC68
Lys K2.2%
AAA72
AAG12
Asp D2.0%
GAU33
GAC42
Glu E2.6%
GAA62
GAG36
Cys C0.7%
UGU13
UGC13
Trp W3.0%
UGA97
UGG18
Arg R2.0%
CGU7
CGC5
CGA48
CGG15
Gly G6.3%
GGU48
GGC47
GGA93
GGG53
Stop 0.2%
UAA5
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_087992.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 44.1% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,805 | 1,719 bp | + | 41.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,806 | 2,879 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,881 | 3,852 | 972 bp | + | 44.3% |
| tRNA-Ile | Transfer RNA | 3,859 | 3,928 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,928 | 3,998 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,998 | 4,066 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,067 | 5,111 | 1,045 bp | + | 42.6% |
| tRNA-Trp | Transfer RNA | 5,112 | 5,182 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,184 | 5,252 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,254 | 5,326 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,356 | 5,422 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,426 | 5,495 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,497 | 7,050 | 1,554 bp | + | 42.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,046 | 7,116 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,120 | 7,188 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,192 | 7,882 | 691 bp | + | 41.0% |
| tRNA-Lys | Transfer RNA | 7,883 | 7,958 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,960 | 8,127 | 168 bp | + | 36.9% |
| ATP6 | Protein-coding gene | 8,118 | 8,801 | 684 bp | + | 40.6% |
| COX3 | Protein-coding gene | 8,801 | 9,585 | 785 bp | + | 42.3% |
| tRNA-Gly | Transfer RNA | 9,586 | 9,657 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,658 | 10,006 | 349 bp | + | 42.7% |
| tRNA-Arg | Transfer RNA | 10,007 | 10,075 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,077 | 10,373 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,367 | 11,747 | 1,381 bp | + | 42.9% |
| tRNA-His | Transfer RNA | 11,748 | 11,816 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,817 | 11,883 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,889 | 11,960 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,961 | 13,799 | 1,839 bp | + | 41.7% |
| ND6 | Protein-coding gene | 13,796 | 14,317 | 522 bp | − | 43.5% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,386 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,393 | 15,533 | 1,141 bp | + | 44.4% |
| tRNA-Thr | Transfer RNA | 15,534 | 15,606 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,606 | 15,677 | 72 bp | − | – |
| D-loop | Control region | 15,678 | 15,678 | 1 bp | – | 0.0% |