Cottus aleuticus
Coastrange sculpin
GC content
46.87%
Whole genome
Non-coding
951 bp
D-loop 855 bp
Where Coastrange sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Coastrange sculpin has the 1,757th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,540 bp
- GC skew (G − C) / (G + C)
- −0.278
- AT skew (A − T) / (A + T)
- +0.013
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,540 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,689 bp
All tRNA1,548 bp
D-loop855 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.373 | −0.124 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.09% | −0.462 | +0.023 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.20% | −0.232 | −0.126 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.45% | −0.302 | +0.022 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.468 | +0.169 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.81% | −0.431 | −0.098 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 47.46% | −0.260 | −0.070 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.99% | −0.341 | −0.200 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.387 | −0.143 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.14% | −0.343 | −0.066 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.02% | −0.399 | −0.017 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.70% | −0.398 | +0.414 | |||||
| CYTBCytochrome b | 1,141 bp | 47.68% | −0.338 | −0.095 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 48.15% | −0.103 | +0.224 | |||||
| 16S rRNA16S ribosomal RNA | 1,689 bp | 46.42% | −0.082 | +0.182 | |||||
| D-loopControl region (D-loop) | 855 bp | 39.88% | −0.103 | +0.016 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU111
UUC123
Leu L17.3%
UUA92
UUG23
CUU175
CUC174
CUA155
CUG41
Ile I6.9%
AUU125
AUC138
Met M3.8%
AUA84
AUG62
Val V5.9%
GUU64
GUC56
GUA72
GUG34
Ser S6.6%
UCU63
UCC67
UCA52
UCG9
AGU10
AGC50
Pro P5.7%
CCU71
CCC95
CCA42
CCG8
Thr T8.2%
ACU52
ACC139
ACA109
ACG12
Ala A9.1%
GCU81
GCC176
GCA84
GCG6
Tyr Y2.8%
UAU32
UAC75
His H2.8%
CAU33
CAC75
Gln Q2.6%
CAA76
CAG23
Asn N3.0%
AAU24
AAC90
Lys K1.9%
AAA62
AAG10
Asp D2.0%
GAU19
GAC56
Glu E2.6%
GAA78
GAG22
Cys C0.6%
UGU7
UGC17
Trp W3.2%
UGA101
UGG19
Arg R2.0%
CGU11
CGC21
CGA38
CGG6
Gly G6.6%
GGU44
GGC95
GGA66
GGG45
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_066923.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 48.2% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,774 | 1,689 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,775 | 2,848 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,849 | 3,823 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,897 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,897 | 3,967 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,967 | 4,036 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,037 | 5,081 | 1,045 bp | + | 49.1% |
| tRNA-Trp | Transfer RNA | 5,082 | 5,152 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,154 | 5,222 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,224 | 5,296 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,334 | 5,399 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,400 | 5,469 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,471 | 7,021 | 1,551 bp | + | 47.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,022 | 7,092 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,096 | 7,168 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,206 | 7,896 | 691 bp | + | 46.5% |
| tRNA-Lys | Transfer RNA | 7,897 | 7,970 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,972 | 8,139 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,130 | 8,813 | 684 bp | + | 47.8% |
| COX3 | Protein-coding gene | 8,813 | 9,598 | 786 bp | + | 47.5% |
| tRNA-Gly | Transfer RNA | 9,599 | 9,670 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,671 | 10,019 | 349 bp | + | 47.0% |
| tRNA-Arg | Transfer RNA | 10,020 | 10,088 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,089 | 10,385 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,379 | 11,759 | 1,381 bp | + | 47.1% |
| tRNA-His | Transfer RNA | 11,760 | 11,828 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,829 | 11,896 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,901 | 11,973 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,974 | 13,812 | 1,839 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,809 | 14,330 | 522 bp | − | 47.7% |
| tRNA-Glu | Transfer RNA | 14,331 | 14,399 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,404 | 15,544 | 1,141 bp | + | 47.7% |
| tRNA-Thr | Transfer RNA | 15,545 | 15,616 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,620 | 15,685 | 66 bp | − | – |
| D-loop | Control region | 15,686 | 16,540 | 855 bp | – | 39.9% |