Cottus perifretum
Chabot fluviatile
GC content
46.89%
Whole genome
Non-coding
932 bp
D-loop 858 bp
Where Chabot fluviatile sits among 2,335 species
Whole-genome GC content against maximum lifespan. Chabot fluviatile has the 1,942nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,523 bp
- GC skew (G − C) / (G + C)
- −0.272
- AT skew (A − T) / (A + T)
- +0.016
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,523 bp
Protein-coding11,406 bp
12S rRNA947 bp
16S rRNA1,690 bp
All tRNA1,548 bp
D-loop858 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.33% | −0.356 | −0.113 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.27% | −0.449 | −0.002 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.84% | −0.210 | −0.120 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.321 | +0.034 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.474 | +0.174 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.52% | −0.452 | −0.097 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.66% | −0.288 | −0.052 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.278 | −0.244 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.19% | −0.368 | −0.127 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.79% | −0.333 | −0.074 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.75% | −0.390 | −0.016 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.89% | −0.376 | +0.434 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.360 | −0.083 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 47.94% | −0.097 | +0.217 | |||||
| 16S rRNA16S ribosomal RNA | 1,690 bp | 46.27% | −0.079 | +0.196 | |||||
| D-loopControl region (D-loop) | 858 bp | 39.28% | −0.092 | +0.013 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU116
UUC115
Leu L17.5%
UUA84
UUG24
CUU183
CUC165
CUA157
CUG54
Ile I6.8%
AUU126
AUC132
Met M3.9%
AUA83
AUG64
Val V5.9%
GUU64
GUC58
GUA72
GUG30
Ser S6.6%
UCU60
UCC73
UCA51
UCG9
AGU11
AGC48
Pro P5.7%
CCU66
CCC100
CCA40
CCG10
Thr T8.2%
ACU50
ACC143
ACA106
ACG14
Ala A9.1%
GCU77
GCC175
GCA86
GCG7
Tyr Y2.9%
UAU29
UAC81
His H2.8%
CAU27
CAC79
Gln Q2.6%
CAA87
CAG12
Asn N3.1%
AAU28
AAC89
Lys K1.9%
AAA63
AAG9
Asp D1.9%
GAU18
GAC56
Glu E2.6%
GAA80
GAG20
Cys C0.6%
UGU11
UGC13
Trp W3.2%
UGA97
UGG23
Arg R2.0%
CGU16
CGC14
CGA38
CGG8
Gly G6.5%
GGU36
GGC91
GGA64
GGG58
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_036146.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 47.9% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,777 | 1,690 bp | + | 46.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,851 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 49.3% |
| tRNA-Ile | Transfer RNA | 3,831 | 3,900 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,900 | 3,970 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,970 | 4,039 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,040 | 5,084 | 1,045 bp | + | 47.3% |
| tRNA-Trp | Transfer RNA | 5,085 | 5,155 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,157 | 5,225 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,227 | 5,299 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,337 | 5,402 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,403 | 5,472 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,474 | 7,024 | 1,551 bp | + | 47.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,025 | 7,095 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,099 | 7,171 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 47.5% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 48.7% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 52.2% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 47.8% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,876 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,881 | 11,953 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,792 | 1,839 bp | + | 44.8% |
| ND6 | Protein-coding gene | 13,789 | 14,310 | 522 bp | − | 47.9% |
| tRNA-Glu | Transfer RNA | 14,311 | 14,379 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,384 | 15,524 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,525 | 15,596 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,600 | 15,665 | 66 bp | − | – |
| D-loop | Control region | 15,666 | 16,523 | 858 bp | – | 39.3% |