Cottus pitensis
Pit sculpin
GC content
45.98%
Whole genome
Non-coding
926 bp
D-loop 854 bp
Where Pit sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pit sculpin has the 2,037th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,513 bp
- GC skew (G − C) / (G + C)
- −0.286
- AT skew (A − T) / (A + T)
- +0.024
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,513 bp
Protein-coding11,407 bp
12S rRNA944 bp
16S rRNA1,688 bp
All tRNA1,548 bp
D-loop854 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.41% | −0.386 | −0.093 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.42% | −0.466 | +0.024 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.42% | −0.233 | −0.110 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.44% | −0.318 | +0.040 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.526 | +0.174 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.463 | −0.060 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 46.57% | −0.290 | −0.048 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.85% | −0.338 | −0.196 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.365 | −0.141 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.20% | −0.348 | −0.058 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.21% | −0.405 | −0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.451 | +0.405 | |||||
| CYTBCytochrome b | 1,141 bp | 47.94% | −0.342 | −0.084 | |||||
| 12S rRNA12S ribosomal RNA | 944 bp | 47.56% | −0.105 | +0.216 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 45.32% | −0.101 | +0.190 | |||||
| D-loopControl region (D-loop) | 854 bp | 38.41% | −0.098 | +0.019 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU111
UUC120
Leu L17.4%
UUA89
UUG21
CUU176
CUC172
CUA168
CUG37
Ile I7.0%
AUU134
AUC134
Met M3.9%
AUA86
AUG61
Val V5.8%
GUU62
GUC46
GUA79
GUG32
Ser S6.6%
UCU59
UCC67
UCA55
UCG11
AGU11
AGC49
Pro P5.6%
CCU72
CCC94
CCA44
CCG5
Thr T8.8%
ACU58
ACC155
ACA110
ACG13
Ala A8.4%
GCU73
GCC160
GCA82
GCG6
Tyr Y2.8%
UAU31
UAC76
His H2.8%
CAU36
CAC72
Gln Q2.6%
CAA86
CAG14
Asn N3.2%
AAU27
AAC93
Lys K1.9%
AAA62
AAG10
Asp D1.8%
GAU22
GAC48
Glu E2.7%
GAA82
GAG19
Cys C0.6%
UGU9
UGC15
Trp W3.2%
UGA105
UGG15
Arg R2.0%
CGU12
CGC19
CGA38
CGG8
Gly G6.5%
GGU45
GGC80
GGA71
GGG53
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_066934.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,012 | 944 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,013 | 1,084 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,085 | 2,772 | 1,688 bp | + | 45.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,773 | 2,846 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,847 | 3,821 | 975 bp | + | 48.4% |
| tRNA-Ile | Transfer RNA | 3,826 | 3,895 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,895 | 3,965 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,965 | 4,034 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,035 | 5,079 | 1,045 bp | + | 48.4% |
| tRNA-Trp | Transfer RNA | 5,080 | 5,150 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,152 | 5,220 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,222 | 5,294 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,332 | 5,397 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,398 | 5,467 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,469 | 7,019 | 1,551 bp | + | 46.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,020 | 7,090 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,094 | 7,166 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,180 | 7,870 | 691 bp | + | 45.4% |
| tRNA-Lys | Transfer RNA | 7,871 | 7,944 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,946 | 8,113 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,104 | 8,787 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 8,787 | 9,572 | 786 bp | + | 46.6% |
| tRNA-Gly | Transfer RNA | 9,573 | 9,644 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,645 | 9,993 | 349 bp | + | 45.9% |
| tRNA-Arg | Transfer RNA | 9,994 | 10,062 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,063 | 10,359 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,353 | 11,733 | 1,381 bp | + | 46.2% |
| tRNA-His | Transfer RNA | 11,734 | 11,802 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,803 | 11,870 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,875 | 11,947 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,948 | 13,786 | 1,839 bp | + | 44.2% |
| ND6 | Protein-coding gene | 13,783 | 14,304 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,378 | 15,518 | 1,141 bp | + | 47.9% |
| tRNA-Thr | Transfer RNA | 15,519 | 15,590 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,594 | 15,659 | 66 bp | − | – |
| D-loop | Control region | 15,660 | 16,513 | 854 bp | – | 38.4% |