Alpinocottus poecilopus
Alpine bullhead
GC content
48.57%
Whole genome
Non-coding
968 bp
D-loop 856 bp
Where Alpine bullhead sits among 2,335 species
Whole-genome GC content against maximum lifespan. Alpine bullhead has the 1,728th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,560 bp
- GC skew (G − C) / (G + C)
- −0.251
- AT skew (A − T) / (A + T)
- −0.001
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Renamed in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
- Earlier name
- Cottus poecilopus
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,560 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,687 bp
All tRNA1,551 bp
D-loop856 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 52.10% | −0.283 | −0.191 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 51.63% | −0.404 | −0.024 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.23% | −0.225 | −0.108 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.32% | −0.248 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.475 | +0.114 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 49.27% | −0.395 | −0.112 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.94% | −0.250 | −0.053 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.29% | −0.274 | −0.224 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.53% | −0.397 | −0.163 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 50.54% | −0.315 | −0.101 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.77% | −0.342 | −0.050 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.62% | −0.351 | +0.422 | |||||
| CYTBCytochrome b | 1,141 bp | 49.43% | −0.319 | −0.127 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 48.57% | −0.104 | +0.224 | |||||
| 16S rRNA16S ribosomal RNA | 1,687 bp | 46.95% | −0.091 | +0.182 | |||||
| D-loopControl region (D-loop) | 856 bp | 40.89% | −0.097 | +0.020 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU106
UUC122
Leu L17.5%
UUA61
UUG34
CUU179
CUC177
CUA158
CUG59
Ile I6.3%
AUU106
AUC135
Met M3.9%
AUA70
AUG80
Val V6.3%
GUU83
GUC58
GUA58
GUG39
Ser S6.6%
UCU61
UCC63
UCA50
UCG16
AGU9
AGC53
Pro P5.8%
CCU64
CCC94
CCA51
CCG10
Thr T8.1%
ACU49
ACC135
ACA103
ACG23
Ala A9.2%
GCU76
GCC191
GCA70
GCG13
Tyr Y2.9%
UAU29
UAC81
His H2.8%
CAU27
CAC80
Gln Q2.5%
CAA62
CAG35
Asn N3.0%
AAU26
AAC88
Lys K1.9%
AAA52
AAG19
Asp D2.0%
GAU17
GAC58
Glu E2.7%
GAA56
GAG45
Cys C0.7%
UGU11
UGC15
Trp W3.1%
UGA77
UGG42
Arg R2.0%
CGU12
CGC23
CGA29
CGG12
Gly G6.5%
GGU30
GGC107
GGA55
GGG56
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_014849.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,774 | 1,687 bp | + | 47.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,775 | 2,848 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,849 | 3,823 | 975 bp | + | 52.1% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,897 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,897 | 3,967 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,967 | 4,035 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,036 | 5,081 | 1,046 bp | + | 51.6% |
| tRNA-Trp | Transfer RNA | 5,082 | 5,152 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,154 | 5,222 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,224 | 5,296 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,334 | 5,399 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,400 | 5,469 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,471 | 7,021 | 1,551 bp | + | 48.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,022 | 7,092 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,096 | 7,168 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,175 | 7,865 | 691 bp | + | 47.3% |
| tRNA-Lys | Transfer RNA | 7,866 | 7,939 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,941 | 8,108 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,099 | 8,782 | 684 bp | + | 49.3% |
| COX3 | Protein-coding gene | 8,782 | 9,566 | 785 bp | + | 49.9% |
| tRNA-Gly | Transfer RNA | 9,568 | 9,640 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,641 | 9,989 | 349 bp | + | 51.3% |
| tRNA-Arg | Transfer RNA | 9,990 | 10,058 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,059 | 10,355 | 297 bp | + | 52.5% |
| ND4 | Protein-coding gene | 10,349 | 11,729 | 1,381 bp | + | 50.5% |
| tRNA-His | Transfer RNA | 11,730 | 11,798 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,799 | 11,866 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,871 | 11,943 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,944 | 13,782 | 1,839 bp | + | 46.8% |
| ND6 | Protein-coding gene | 13,779 | 14,300 | 522 bp | − | 49.6% |
| tRNA-Glu | Transfer RNA | 14,301 | 14,368 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,373 | 15,513 | 1,141 bp | + | 49.4% |
| tRNA-Thr | Transfer RNA | 15,514 | 15,585 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,635 | 15,704 | 70 bp | − | – |
| D-loop | Control region | 15,705 | 16,560 | 856 bp | – | 40.9% |