MitoAge

Crocodylus palustris

Mugger, or Marsh crocodile

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Maximum lifespan
44 yr
AnAge record
mtDNA size
17,052 bp
RefSeq NC_014706.1
GC content
42.68%
Whole genome
Non-coding
1,555 bp
D-loop 1,333 bp

Where Mugger, or Marsh crocodile sits among 2,335 species

Whole-genome GC content against maximum lifespan. Mugger, or Marsh crocodile has the 205th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Mugger, or Marsh crocodile
  • This species
  • Other reptiles
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,052 bp
GC skew (G − C) / (G + C)
−0.315
AT skew (A − T) / (A + T)
+0.130

Life history

Maximum lifespan
44 years
Adult weight
42.7 kg
Female sexual maturity
6.3 years
Male sexual maturity
10 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03257)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,052 bp
Protein-coding11,382 bp
12S rRNA984 bp
16S rRNA1,593 bp
All tRNA1,540 bp
D-loop1,333 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1963 bp27.3%26.6%15.7%30.4%46.11%−0.320+0.013
ND2NADH dehydrogenase subunit 21,056 bp30.6%25.7%11.7%32.0%43.75%−0.463+0.088
COX1Cytochrome c oxidase subunit I1,557 bp29.8%27.9%15.4%27.0%42.33%−0.275+0.033
COX2Cytochrome c oxidase subunit II684 bp33.5%23.5%13.7%29.2%42.98%−0.361+0.174
ATP8ATP synthase F0 subunit 8162 bp37.7%24.7%11.1%26.5%37.65%−0.410+0.208
ATP6ATP synthase F0 subunit 6684 bp32.2%24.7%12.3%30.8%43.13%−0.431+0.131
COX3Cytochrome c oxidase subunit III784 bp28.4%25.6%15.8%30.1%45.92%−0.311+0.052
ND3NADH dehydrogenase subunit 3348 bp29.0%26.4%16.4%28.2%44.54%−0.265+0.047
ND4LNADH dehydrogenase subunit 4L294 bp26.2%28.6%11.6%33.7%45.24%−0.489−0.043
ND4NADH dehydrogenase subunit 41,374 bp31.4%25.5%12.8%30.3%43.09%−0.405+0.105
ND5NADH dehydrogenase subunit 51,855 bp31.2%25.2%12.7%30.9%43.61%−0.419+0.107
ND6NADH dehydrogenase subunit 6528 bp38.6%16.5%11.6%33.3%44.89%−0.485+0.402
CYTBCytochrome b1,156 bp29.3%25.3%13.6%31.7%45.33%−0.401+0.073
12S rRNA12S ribosomal RNA984 bp32.5%19.8%21.1%26.5%47.66%−0.113+0.243
16S rRNA16S ribosomal RNA1,593 bp36.2%20.8%18.3%24.7%42.94%−0.149+0.270
D-loopControl region (D-loop)1,333 bp42.1%30.2%11.0%16.7%27.68%−0.203+0.164

Codon usage

Counts per codon, darker is more frequent

3,814 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU77
UUC143
Leu L17.0%
UUA113
UUG28
CUU72
CUC93
CUA271
CUG72
Ile I7.9%
AUU133
AUC168
Met M5.3%
AUA146
AUG56
Val V4.8%
GUU41
GUC39
GUA75
GUG29
Ser S7.8%
UCU38
UCC72
UCA107
UCG13
AGU12
AGC54
Pro P5.3%
CCU20
CCC48
CCA119
CCG14
Thr T9.0%
ACU47
ACC140
ACA152
ACG5
Ala A7.8%
GCU46
GCC142
GCA104
GCG6
Tyr Y3.0%
UAU33
UAC82
His H2.4%
CAU15
CAC77
Gln Q2.8%
CAA89
CAG19
Asn N3.4%
AAU33
AAC97
Lys K2.3%
AAA79
AAG10
Asp D1.9%
GAU18
GAC54
Glu E2.4%
GAA73
GAG18
Cys C0.7%
UGU10
UGC16
Trp W2.6%
UGA77
UGG23
Arg R1.9%
CGU6
CGC16
CGA45
CGG7
Gly G5.6%
GGU22
GGC59
GGA101
GGG30
Stop 0.3%
UAA8
UAG0
AGA0
AGG2

Genome map

38 annotated features in NC_014706.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
12S rRNARibosomal RNA1984984 bp+47.7%
tRNA-ValTransfer RNA9851,05369 bp+–
16S rRNARibosomal RNA1,0542,6461,593 bp+42.9%
tRNA-Leu (UUR)Transfer RNA2,6472,72175 bp+–
ND1Protein-coding gene2,7223,684963 bp+46.1%
tRNA-IleTransfer RNA3,6833,75472 bp+–
tRNA-GlnTransfer RNA3,7533,82371 bp−–
tRNA-MetTransfer RNA3,8263,89368 bp+–
ND2Protein-coding gene3,8984,9531,056 bp+43.8%
tRNA-TrpTransfer RNA4,9545,02774 bp+–
tRNA-AlaTransfer RNA5,0295,09769 bp−–
tRNA-AsnTransfer RNA5,1005,17273 bp−–
tRNA-CysTransfer RNA5,1805,24566 bp−–
tRNA-TyrTransfer RNA5,2465,31671 bp−–
COX1Protein-coding gene5,3186,8741,557 bp+42.3%
tRNA-Ser (UCN)Transfer RNA6,8956,96470 bp−–
tRNA-AspTransfer RNA6,9687,03871 bp+–
COX2Protein-coding gene7,0397,722684 bp+43.0%
tRNA-LysTransfer RNA7,7247,79774 bp+–
ATP8Protein-coding gene7,7997,960162 bp+37.7%
ATP6Protein-coding gene7,9518,634684 bp+43.1%
COX3Protein-coding gene8,6349,417784 bp+45.9%
tRNA-GlyTransfer RNA9,4189,48770 bp+–
ND3Protein-coding gene9,4889,835348 bp+44.5%
tRNA-ArgTransfer RNA9,8469,91469 bp+–
ND4LProtein-coding gene9,91810,211294 bp+45.2%
ND4Protein-coding gene10,20511,5781,374 bp+43.1%
tRNA-Ser (AGY)Transfer RNA11,60911,66961 bp+–
tRNA-HisTransfer RNA11,68711,75670 bp+–
tRNA-Leu (CUN)Transfer RNA11,78411,85471 bp+–
ND5Protein-coding gene11,85813,7121,855 bp+43.6%
ND6Protein-coding gene13,66814,195528 bp−44.9%
tRNA-GluTransfer RNA14,19614,26671 bp−–
CYTBProtein-coding gene14,28215,4371,156 bp+45.3%
tRNA-ThrTransfer RNA15,49415,56572 bp+–
tRNA-ProTransfer RNA15,57815,64568 bp−–
tRNA-PheTransfer RNA15,65415,72067 bp+–
D-loopControl region15,72017,0521,333 bp–27.7%

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