Cromileptes altivelis
Humpback grouper
GC content
44.69%
Whole genome
Non-coding
873 bp
D-loop 799 bp
Where Humpback grouper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Humpback grouper has the 998th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,497 bp
- GC skew (G − C) / (G + C)
- −0.299
- AT skew (A − T) / (A + T)
- +0.052
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,497 bp
Protein-coding11,406 bp
12S rRNA952 bp
16S rRNA1,706 bp
All tRNA1,560 bp
D-loop799 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.00% | −0.402 | +0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.99% | −0.491 | +0.112 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.10% | −0.208 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.26% | −0.253 | +0.048 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.86% | −0.472 | +0.063 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.52% | −0.458 | +0.030 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.75% | −0.297 | −0.029 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.382 | −0.152 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.436 | −0.041 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.26% | −0.398 | +0.008 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.77% | −0.431 | +0.033 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.79% | −0.473 | +0.442 | |||||
| CYTBCytochrome b | 1,141 bp | 45.75% | −0.372 | −0.099 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 49.37% | −0.123 | +0.178 | |||||
| 16S rRNA16S ribosomal RNA | 1,706 bp | 46.07% | −0.109 | +0.220 | |||||
| D-loopControl region (D-loop) | 799 bp | 32.17% | −0.089 | +0.004 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU113
UUC123
Leu L17.5%
UUA94
UUG14
CUU145
CUC149
CUA226
CUG37
Ile I7.3%
AUU160
AUC119
Met M3.9%
AUA108
AUG41
Val V5.6%
GUU55
GUC51
GUA91
GUG17
Ser S6.4%
UCU39
UCC78
UCA64
UCG5
AGU9
AGC48
Pro P5.8%
CCU61
CCC89
CCA63
CCG7
Thr T8.4%
ACU57
ACC112
ACA141
ACG8
Ala A8.7%
GCU57
GCC154
GCA108
GCG13
Tyr Y2.8%
UAU37
UAC71
His H2.8%
CAU26
CAC82
Gln Q2.5%
CAA88
CAG8
Asn N3.1%
AAU33
AAC86
Lys K2.0%
AAA68
AAG8
Asp D2.0%
GAU23
GAC54
Glu E2.5%
GAA79
GAG17
Cys C0.8%
UGU12
UGC18
Trp W3.1%
UGA96
UGG22
Arg R2.0%
CGU10
CGC17
CGA46
CGG4
Gly G6.3%
GGU42
GGC78
GGA81
GGG38
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_021614.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,022 | 952 bp | + | 49.4% |
| tRNA-Val | Transfer RNA | 1,023 | 1,092 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,798 | 1,706 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,799 | 2,873 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,874 | 3,848 | 975 bp | + | 48.0% |
| tRNA-Ile | Transfer RNA | 3,853 | 3,922 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,922 | 3,992 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,993 | 4,061 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,062 | 5,106 | 1,045 bp | + | 47.0% |
| tRNA-Trp | Transfer RNA | 5,107 | 5,177 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,179 | 5,247 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,248 | 5,320 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,360 | 5,426 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,427 | 5,497 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,499 | 7,049 | 1,551 bp | + | 44.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,051 | 7,121 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,125 | 7,197 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,206 | 7,896 | 691 bp | + | 42.3% |
| tRNA-Lys | Transfer RNA | 7,897 | 7,970 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,972 | 8,139 | 168 bp | + | 42.9% |
| ATP6 | Protein-coding gene | 8,130 | 8,813 | 684 bp | + | 41.5% |
| COX3 | Protein-coding gene | 8,813 | 9,597 | 785 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,598 | 9,669 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,670 | 10,018 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 10,019 | 10,087 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,088 | 10,384 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,378 | 11,758 | 1,381 bp | + | 45.3% |
| tRNA-His | Transfer RNA | 11,759 | 11,828 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,829 | 11,898 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,907 | 11,979 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,980 | 13,818 | 1,839 bp | + | 43.8% |
| ND6 | Protein-coding gene | 13,815 | 14,336 | 522 bp | − | 45.8% |
| tRNA-Glu | Transfer RNA | 14,337 | 14,406 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,415 | 15,555 | 1,141 bp | + | 45.8% |
| tRNA-Thr | Transfer RNA | 15,556 | 15,628 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,629 | 15,698 | 70 bp | − | – |
| D-loop | Control region | 15,699 | 16,497 | 799 bp | – | 32.2% |