Ctenolabrus rupestris
Goldsinny wrasse
GC content
48.25%
Whole genome
Non-coding
894 bp
D-loop 827 bp
Where Goldsinny wrasse sits among 2,335 species
Whole-genome GC content against maximum lifespan. Goldsinny wrasse has the 1,753rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,495 bp
- GC skew (G − C) / (G + C)
- −0.251
- AT skew (A − T) / (A + T)
- +0.009
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,495 bp
Protein-coding11,409 bp
12S rRNA947 bp
16S rRNA1,688 bp
All tRNA1,557 bp
D-loop827 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.82% | −0.298 | −0.098 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 51.58% | −0.380 | −0.043 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.91% | −0.195 | −0.119 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 48.63% | −0.268 | +0.020 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.470 | +0.035 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.344 | −0.093 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.43% | −0.263 | −0.063 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 51.14% | −0.311 | −0.244 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.396 | −0.108 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.75% | −0.298 | −0.081 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.47% | −0.331 | −0.041 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.23% | −0.377 | +0.449 | |||||
| CYTBCytochrome b | 1,141 bp | 51.80% | −0.354 | −0.080 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 47.94% | −0.075 | +0.181 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 47.39% | −0.098 | +0.207 | |||||
| D-loopControl region (D-loop) | 827 bp | 38.91% | −0.153 | +0.012 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU118
UUC113
Leu L17.5%
UUA70
UUG27
CUU165
CUC206
CUA128
CUG71
Ile I6.5%
AUU143
AUC105
Met M3.9%
AUA66
AUG81
Val V6.1%
GUU69
GUC72
GUA60
GUG30
Ser S6.3%
UCU41
UCC69
UCA57
UCG15
AGU13
AGC44
Pro P5.9%
CCU44
CCC101
CCA56
CCG22
Thr T7.7%
ACU51
ACC125
ACA91
ACG26
Ala A9.8%
GCU65
GCC185
GCA100
GCG23
Tyr Y3.0%
UAU41
UAC75
His H2.6%
CAU21
CAC78
Gln Q2.7%
CAA76
CAG27
Asn N2.9%
AAU35
AAC77
Lys K2.0%
AAA62
AAG14
Asp D2.1%
GAU18
GAC61
Glu E2.5%
GAA60
GAG35
Cys C0.6%
UGU5
UGC19
Trp W3.2%
UGA86
UGG36
Arg R2.0%
CGU6
CGC18
CGA38
CGG14
Gly G6.5%
GGU27
GGC98
GGA60
GGG62
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_052762.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
Not drawn: D-loop 1,089–16,495, annotated over most of the record.
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 47.9% |
| tRNA-Val | Transfer RNA | 1,016 | 1,088 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,090 | 2,777 | 1,688 bp | + | 47.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,851 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 48.8% |
| tRNA-Ile | Transfer RNA | 3,831 | 3,901 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,086 | 1,045 bp | + | 51.6% |
| tRNA-Trp | Transfer RNA | 5,087 | 5,157 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,159 | 5,227 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,229 | 5,301 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,405 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,475 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,477 | 7,027 | 1,551 bp | + | 47.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,028 | 7,098 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,102 | 7,174 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 48.6% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,947 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,949 | 8,116 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,107 | 8,790 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 8,790 | 9,574 | 785 bp | + | 49.4% |
| tRNA-Gly | Transfer RNA | 9,575 | 9,646 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,999 | 352 bp | + | 51.1% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 49.8% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,877 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,956 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,957 | 13,795 | 1,839 bp | + | 47.5% |
| ND6 | Protein-coding gene | 13,792 | 14,313 | 522 bp | − | 49.2% |
| tRNA-Glu | Transfer RNA | 14,314 | 14,382 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,387 | 15,527 | 1,141 bp | + | 51.8% |
| tRNA-Thr | Transfer RNA | 15,528 | 15,599 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,599 | 15,669 | 71 bp | − | – |