MitoAge

Ctenopharyngodon idella

Silver orfe

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Maximum lifespan
21 yr
AnAge record
mtDNA size
16,609 bp
RefSeq NC_010288.1
GC content
41.89%
Whole genome
Non-coding
1,002 bp
D-loop 928 bp

Where Silver orfe sits among 2,335 species

Whole-genome GC content against maximum lifespan. Silver orfe has the 836th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Silver orfe
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,609 bp
GC skew (G − C) / (G + C)
−0.253
AT skew (A − T) / (A + T)
+0.098

Life history

Maximum lifespan
21 years
Adult weight
24.8 kg
Female sexual maturity
4.2 years
Male sexual maturity
4 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03898)

About this record

Lifespan source
AnAge build 15
Based on
an observed animal, origin not stated
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,609 bp
Protein-coding11,398 bp
12S rRNA958 bp
16S rRNA1,691 bp
All tRNA1,560 bp
D-loop928 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp31.2%28.8%14.3%25.7%40.00%−0.287+0.039
ND2NADH dehydrogenase subunit 21,045 bp33.4%24.3%12.0%30.3%42.30%−0.434+0.158
COX1Cytochrome c oxidase subunit I1,551 bp27.5%29.8%17.5%25.2%42.68%−0.181−0.039
COX2Cytochrome c oxidase subunit II691 bp30.7%27.6%16.1%25.6%41.68%−0.229+0.052
ATP8ATP synthase F0 subunit 8165 bp37.6%21.8%11.5%29.1%40.61%−0.433+0.265
ATP6ATP synthase F0 subunit 6684 bp30.0%31.0%12.7%26.3%39.04%−0.348−0.017
COX3Cytochrome c oxidase subunit III785 bp27.6%28.0%16.9%27.4%44.33%−0.236−0.007
ND3NADH dehydrogenase subunit 3349 bp27.8%26.9%15.2%30.1%45.27%−0.329+0.016
ND4LNADH dehydrogenase subunit 4L297 bp25.6%27.6%16.8%30.0%46.80%−0.281−0.038
ND4NADH dehydrogenase subunit 41,382 bp31.8%27.1%13.8%27.2%41.03%−0.326+0.080
ND5NADH dehydrogenase subunit 51,836 bp32.7%27.3%12.3%27.7%39.98%−0.387+0.091
ND6NADH dehydrogenase subunit 6522 bp42.9%14.9%11.3%30.8%42.15%−0.464+0.483
CYTBCytochrome b1,135 bp30.0%28.4%13.8%27.8%41.59%−0.335+0.029
12S rRNA12S ribosomal RNA958 bp31.4%18.8%22.4%27.3%49.79%−0.099+0.252
16S rRNA16S ribosomal RNA1,691 bp37.2%20.8%19.6%22.5%42.05%−0.069+0.284
D-loopControl region (D-loop)928 bp34.5%32.3%12.4%20.8%33.19%−0.253+0.032

Codon usage

Counts per codon, darker is more frequent

3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU102
UUC128
Leu L16.3%
UUA141
UUG15
CUU111
CUC77
CUA242
CUG32
Ile I7.7%
AUU172
AUC122
Met M4.7%
AUA132
AUG45
Val V5.9%
GUU60
GUC35
GUA106
GUG22
Ser S6.2%
UCU45
UCC50
UCA84
UCG4
AGU17
AGC37
Pro P5.7%
CCU34
CCC48
CCA123
CCG11
Thr T8.1%
ACU45
ACC98
ACA153
ACG11
Ala A8.8%
GCU64
GCC127
GCA135
GCG9
Tyr Y3.0%
UAU60
UAC53
His H2.8%
CAU36
CAC69
Gln Q2.5%
CAA89
CAG7
Asn N3.2%
AAU48
AAC72
Lys K2.1%
AAA76
AAG4
Asp D2.0%
GAU25
GAC52
Glu E2.7%
GAA84
GAG19
Cys C0.7%
UGU8
UGC17
Trp W3.2%
UGA114
UGG6
Arg R2.0%
CGU11
CGC13
CGA47
CGG5
Gly G6.4%
GGU34
GGC38
GGA142
GGG30
Stop 0.2%
UAA6
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_010288.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,027958 bp+49.8%
tRNA-ValTransfer RNA1,0281,09972 bp+–
16S rRNARibosomal RNA1,1002,7901,691 bp+42.1%
tRNA-Leu (UUR)Transfer RNA2,7922,86776 bp+–
ND1Protein-coding gene2,8693,843975 bp+40.0%
tRNA-IleTransfer RNA3,8483,91972 bp+–
tRNA-GlnTransfer RNA3,9183,98871 bp−–
tRNA-MetTransfer RNA3,9904,05869 bp+–
ND2Protein-coding gene4,0595,1031,045 bp+42.3%
tRNA-TrpTransfer RNA5,1045,17471 bp+–
tRNA-AlaTransfer RNA5,1765,24469 bp−–
tRNA-AsnTransfer RNA5,2465,31873 bp−–
tRNA-CysTransfer RNA5,3515,41868 bp−–
tRNA-TyrTransfer RNA5,4205,49071 bp−–
COX1Protein-coding gene5,4927,0421,551 bp+42.7%
tRNA-Ser (UCN)Transfer RNA7,0437,11371 bp−–
tRNA-AspTransfer RNA7,1177,19074 bp+–
COX2Protein-coding gene7,2057,895691 bp+41.7%
tRNA-LysTransfer RNA7,8967,97176 bp+–
ATP8Protein-coding gene7,9738,137165 bp+40.6%
ATP6Protein-coding gene8,1318,814684 bp+39.0%
COX3Protein-coding gene8,8149,598785 bp+44.3%
tRNA-GlyTransfer RNA9,5999,67072 bp+–
ND3Protein-coding gene9,67110,019349 bp+45.3%
tRNA-ArgTransfer RNA10,02010,08970 bp+–
ND4LProtein-coding gene10,09010,386297 bp+46.8%
ND4Protein-coding gene10,38011,7611,382 bp+41.0%
tRNA-HisTransfer RNA11,76211,83069 bp+–
tRNA-Ser (AGY)Transfer RNA11,83211,89867 bp+–
tRNA-Leu (CUN)Transfer RNA11,90111,97373 bp+–
ND5Protein-coding gene11,97413,8091,836 bp+40.0%
ND6Protein-coding gene13,80614,327522 bp−42.2%
tRNA-GluTransfer RNA14,32814,39568 bp−–
CYTBProtein-coding gene14,40015,5341,135 bp+41.6%
tRNA-ThrTransfer RNA15,54115,61272 bp+–
tRNA-ProTransfer RNA15,61215,68170 bp−–
D-loopControl region15,68216,609928 bp–33.2%

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