Cubiceps pauciradiatus
Bigeye cigarfish
GC content
44.35%
Whole genome
Non-coding
921 bp
D-loop 858 bp
Where Bigeye cigarfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bigeye cigarfish has the 2,127th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,522 bp
- GC skew (G − C) / (G + C)
- −0.267
- AT skew (A − T) / (A + T)
- +0.035
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,522 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,697 bp
All tRNA1,550 bp
D-loop858 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.21% | −0.369 | −0.059 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.04% | −0.472 | +0.036 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.68% | −0.189 | −0.086 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.27% | −0.258 | −0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.452 | +0.116 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 43.49% | −0.367 | −0.057 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.48% | −0.300 | −0.033 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.56% | −0.325 | −0.158 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.300 | −0.197 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.30% | −0.344 | +0.014 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.12% | −0.387 | +0.034 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 42.53% | −0.378 | +0.340 | |||||
| CYTBCytochrome b | 1,141 bp | 44.52% | −0.303 | −0.065 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 48.79% | −0.091 | +0.171 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 45.08% | −0.111 | +0.219 | |||||
| D-loopControl region (D-loop) | 858 bp | 34.03% | −0.185 | +0.046 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU104
UUC125
Leu L17.2%
UUA115
UUG11
CUU172
CUC111
CUA198
CUG47
Ile I7.2%
AUU167
AUC106
Met M4.2%
AUA97
AUG64
Val V6.0%
GUU78
GUC52
GUA84
GUG14
Ser S6.3%
UCU38
UCC70
UCA69
UCG9
AGU9
AGC44
Pro P5.9%
CCU70
CCC78
CCA69
CCG6
Thr T7.8%
ACU49
ACC115
ACA125
ACG8
Ala A9.2%
GCU75
GCC146
GCA125
GCG5
Tyr Y2.9%
UAU58
UAC54
His H2.8%
CAU28
CAC77
Gln Q2.5%
CAA81
CAG16
Asn N3.1%
AAU35
AAC83
Lys K1.9%
AAA64
AAG10
Asp D2.0%
GAU23
GAC54
Glu E2.8%
GAA86
GAG19
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA107
UGG12
Arg R1.9%
CGU10
CGC6
CGA49
CGG9
Gly G6.3%
GGU36
GGC76
GGA97
GGG30
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_013150.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 48.8% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,784 | 1,697 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,785 | 2,858 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 44.2% |
| tRNA-Ile | Transfer RNA | 3,839 | 3,909 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,979 | 4,047 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,048 | 5,093 | 1,046 bp | + | 47.0% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,409 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,476 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,028 | 1,551 bp | + | 44.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,029 | 7,099 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,175 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,185 | 7,875 | 691 bp | + | 43.3% |
| tRNA-Lys | Transfer RNA | 7,876 | 7,949 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,118 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,109 | 8,791 | 683 bp | + | 43.5% |
| COX3 | Protein-coding gene | 8,792 | 9,576 | 785 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,648 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 47.6% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,067 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 43.3% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,791 | 1,839 bp | + | 43.1% |
| ND6 | Protein-coding gene | 13,788 | 14,309 | 522 bp | − | 42.5% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,378 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,383 | 15,523 | 1,141 bp | + | 44.5% |
| tRNA-Thr | Transfer RNA | 15,524 | 15,595 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,595 | 15,664 | 70 bp | − | – |
| D-loop | Control region | 15,665 | 16,522 | 858 bp | – | 34.0% |