Culaea inconstans
Brook stickleback
GC content
42.90%
Whole genome
Non-coding
889 bp
D-loop 822 bp
Where Brook stickleback sits among 2,335 species
Whole-genome GC content against maximum lifespan. Brook stickleback has the 2,256th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,465 bp
- GC skew (G − C) / (G + C)
- −0.242
- AT skew (A − T) / (A + T)
- +0.008
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,465 bp
Protein-coding11,411 bp
12S rRNA943 bp
16S rRNA1,684 bp
All tRNA1,543 bp
D-loop822 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.15% | −0.328 | −0.113 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 42.12% | −0.406 | −0.033 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.97% | −0.182 | −0.114 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.68% | −0.243 | −0.032 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 34.52% | −0.517 | −0.036 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.79% | −0.369 | −0.101 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 45.80% | −0.261 | −0.122 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 47.29% | −0.398 | −0.103 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.333 | −0.170 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 41.64% | −0.322 | −0.055 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 39.70% | −0.315 | −0.042 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.06% | −0.400 | +0.466 | |||||
| CYTBCytochrome b | 1,141 bp | 43.30% | −0.332 | −0.107 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 46.13% | −0.076 | +0.228 | |||||
| 16S rRNA16S ribosomal RNA | 1,684 bp | 43.59% | −0.057 | +0.185 | |||||
| D-loopControl region (D-loop) | 822 bp | 38.93% | −0.125 | +0.092 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU141
UUC107
Leu L16.4%
UUA142
UUG31
CUU167
CUC94
CUA165
CUG24
Ile I7.4%
AUU175
AUC108
Met M4.5%
AUA120
AUG50
Val V5.7%
GUU96
GUC36
GUA67
GUG20
Ser S6.9%
UCU78
UCC61
UCA61
UCG3
AGU14
AGC45
Pro P5.6%
CCU74
CCC78
CCA54
CCG7
Thr T8.1%
ACU79
ACC110
ACA108
ACG13
Ala A8.4%
GCU99
GCC125
GCA84
GCG11
Tyr Y2.8%
UAU50
UAC57
His H2.8%
CAU37
CAC68
Gln Q2.8%
CAA92
CAG14
Asn N3.4%
AAU61
AAC68
Lys K1.9%
AAA59
AAG15
Asp D1.9%
GAU28
GAC43
Glu E2.5%
GAA80
GAG16
Cys C0.7%
UGU14
UGC12
Trp W3.1%
UGA97
UGG21
Arg R2.0%
CGU17
CGC9
CGA36
CGG13
Gly G6.5%
GGU47
GGC78
GGA78
GGG43
Stop 0.3%
UAA7
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_011577.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,011 | 943 bp | + | 46.1% |
| tRNA-Val | Transfer RNA | 1,012 | 1,083 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,084 | 2,767 | 1,684 bp | + | 43.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,768 | 2,841 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,842 | 3,816 | 975 bp | + | 42.2% |
| tRNA-Ile | Transfer RNA | 3,820 | 3,889 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,889 | 3,959 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,959 | 4,027 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,028 | 5,074 | 1,047 bp | + | 42.1% |
| tRNA-Trp | Transfer RNA | 5,073 | 5,141 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,143 | 5,211 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,213 | 5,285 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,320 | 5,384 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,385 | 5,454 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,456 | 7,006 | 1,551 bp | + | 44.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,007 | 7,077 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,081 | 7,150 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,162 | 7,852 | 691 bp | + | 41.7% |
| tRNA-Lys | Transfer RNA | 7,853 | 7,926 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,928 | 8,095 | 168 bp | + | 34.5% |
| ATP6 | Protein-coding gene | 8,086 | 8,769 | 684 bp | + | 40.8% |
| COX3 | Protein-coding gene | 8,769 | 9,554 | 786 bp | + | 45.8% |
| tRNA-Gly | Transfer RNA | 9,554 | 9,624 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,625 | 9,975 | 351 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,974 | 10,042 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,043 | 10,339 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 10,333 | 11,713 | 1,381 bp | + | 41.6% |
| tRNA-His | Transfer RNA | 11,714 | 11,781 | 68 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,782 | 11,849 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,854 | 11,926 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,930 | 13,768 | 1,839 bp | + | 39.7% |
| ND6 | Protein-coding gene | 13,765 | 14,286 | 522 bp | − | 44.1% |
| tRNA-Glu | Transfer RNA | 14,287 | 14,356 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,362 | 15,502 | 1,141 bp | + | 43.3% |
| tRNA-Thr | Transfer RNA | 15,503 | 15,574 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,574 | 15,643 | 70 bp | − | – |
| D-loop | Control region | 15,644 | 16,465 | 822 bp | – | 38.9% |