MitoAge

Cyclemys dentata

Asian leaf turtle

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Maximum lifespan
14.7 yr
AnAge record
mtDNA size
16,489 bp
RefSeq NC_018793.1
GC content
38.50%
Whole genome
Non-coding
1,030 bp
D-loop 973 bp

Where Asian leaf turtle sits among 2,335 species

Whole-genome GC content against maximum lifespan. Asian leaf turtle has the 1,265th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Asian leaf turtle
  • This species
  • Other reptiles
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,489 bp
GC skew (G − C) / (G + C)
−0.320
AT skew (A − T) / (A + T)
+0.115

Life history

Maximum lifespan
14.7 years
Adult weight
1.3 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03720)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,489 bp
Protein-coding11,356 bp
12S rRNA966 bp
16S rRNA1,599 bp
All tRNA1,547 bp
D-loop973 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1969 bp32.5%28.7%11.9%26.9%38.80%−0.388+0.062
ND2NADH dehydrogenase subunit 21,042 bp36.5%24.8%9.9%28.9%38.77%−0.490+0.191
COX1Cytochrome c oxidase subunit I1,548 bp28.6%30.4%16.9%23.9%40.88%−0.171−0.031
COX2Cytochrome c oxidase subunit II687 bp34.9%28.7%13.2%23.0%36.30%−0.269+0.098
ATP8ATP synthase F0 subunit 8168 bp39.9%28.0%6.5%25.6%32.14%−0.593+0.175
ATP6ATP synthase F0 subunit 6684 bp33.6%29.2%10.7%26.5%37.14%−0.425+0.070
COX3Cytochrome c oxidase subunit III784 bp30.5%27.8%15.1%26.7%41.71%−0.278+0.046
ND3NADH dehydrogenase subunit 3349 bp31.5%34.7%11.2%22.6%33.81%−0.339−0.048
ND4LNADH dehydrogenase subunit 4L300 bp30.0%32.3%11.0%26.7%37.67%−0.416−0.037
ND4NADH dehydrogenase subunit 41,377 bp33.8%27.3%12.2%26.7%38.93%−0.373+0.106
ND5NADH dehydrogenase subunit 51,806 bp34.3%27.2%10.0%28.4%38.43%−0.478+0.115
ND6NADH dehydrogenase subunit 6525 bp46.7%15.0%8.0%30.3%38.29%−0.582+0.512
CYTBCytochrome b1,140 bp30.0%27.9%12.0%30.1%42.11%−0.429+0.036
12S rRNA12S ribosomal RNA966 bp36.9%22.2%16.9%24.1%40.99%−0.177+0.249
16S rRNA16S ribosomal RNA1,599 bp39.6%21.8%16.4%22.2%38.59%−0.151+0.289
D-loopControl region (D-loop)973 bp33.1%35.3%12.8%18.8%31.66%−0.188−0.032

Codon usage

Counts per codon, darker is more frequent

3,789 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU98
UUC123
Leu L16.0%
UUA161
UUG31
CUU82
CUC57
CUA262
CUG14
Ile I8.6%
AUU160
AUC166
Met M6.3%
AUA207
AUG32
Val V4.3%
GUU26
GUC23
GUA96
GUG18
Ser S7.2%
UCU52
UCC44
UCA123
UCG5
AGU16
AGC32
Pro P5.4%
CCU32
CCC37
CCA132
CCG3
Thr T9.2%
ACU75
ACC114
ACA151
ACG7
Ala A6.7%
GCU51
GCC107
GCA87
GCG8
Tyr Y3.4%
UAU64
UAC63
His H2.7%
CAU49
CAC52
Gln Q2.6%
CAA90
CAG7
Asn N3.6%
AAU48
AAC89
Lys K2.5%
AAA80
AAG13
Asp D1.8%
GAU26
GAC41
Glu E2.3%
GAA79
GAG10
Cys C0.8%
UGU18
UGC13
Trp W3.0%
UGA98
UGG14
Arg R1.9%
CGU10
CGC11
CGA50
CGG0
Gly G5.9%
GGU36
GGC58
GGA82
GGG46
Stop 0.3%
UAA8
UAG0
AGA0
AGG2

Genome map

38 annotated features in NC_018793.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,036966 bp+41.0%
tRNA-ValTransfer RNA1,0371,10670 bp+–
16S rRNARibosomal RNA1,1072,7051,599 bp+38.6%
tRNA-Leu (UUR)Transfer RNA2,7062,78176 bp+–
ND1Protein-coding gene2,7823,750969 bp+38.8%
tRNA-IleTransfer RNA3,7533,82270 bp+–
tRNA-GlnTransfer RNA3,8223,89271 bp−–
tRNA-MetTransfer RNA3,8923,96069 bp+–
ND2Protein-coding gene3,9615,0021,042 bp+38.8%
tRNA-TrpTransfer RNA5,0035,07775 bp+–
tRNA-AlaTransfer RNA5,0795,14769 bp−–
tRNA-AsnTransfer RNA5,1495,22173 bp−–
tRNA-CysTransfer RNA5,2485,31366 bp−–
tRNA-TyrTransfer RNA5,3145,38471 bp−–
COX1Protein-coding gene5,3866,9331,548 bp+40.9%
tRNA-Ser (UCN)Transfer RNA6,9256,99571 bp−–
tRNA-AspTransfer RNA6,9987,06770 bp+–
COX2Protein-coding gene7,0687,754687 bp+36.3%
tRNA-LysTransfer RNA7,7567,82873 bp+–
ATP8Protein-coding gene7,8307,997168 bp+32.1%
ATP6Protein-coding gene7,9888,671684 bp+37.1%
COX3Protein-coding gene8,6719,454784 bp+41.7%
tRNA-GlyTransfer RNA9,4559,52369 bp+–
ND3Protein-coding gene9,5249,872349 bp+33.8%
tRNA-ArgTransfer RNA9,8739,94270 bp+–
ND4LProtein-coding gene9,94310,242300 bp+37.7%
ND4Protein-coding gene10,23611,6121,377 bp+38.9%
tRNA-HisTransfer RNA11,62611,69570 bp+–
tRNA-Ser (AGY)Transfer RNA11,69611,76166 bp+–
tRNA-Leu (CUN)Transfer RNA11,76111,83272 bp+–
ND5Protein-coding gene11,83313,6381,806 bp+38.4%
ND6Protein-coding gene13,63414,158525 bp−38.3%
tRNA-GluTransfer RNA14,15914,22668 bp−–
CYTBProtein-coding gene14,23115,3701,140 bp+42.1%
tRNA-ThrTransfer RNA15,37515,44672 bp+–
tRNA-ProTransfer RNA15,44815,51669 bp−–
D-loopControl region15,51716,489973 bp–31.7%

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