Cycleptus elongatus
Blue sucker
GC content
44.14%
Whole genome
Non-coding
1,017 bp
D-loop 943 bp
Where Blue sucker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blue sucker has the 1,342nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,626 bp
- GC skew (G − C) / (G + C)
- −0.206
- AT skew (A − T) / (A + T)
- +0.063
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,626 bp
Protein-coding11,407 bp
12S rRNA950 bp
16S rRNA1,688 bp
All tRNA1,564 bp
D-loop943 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.15% | −0.244 | +0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.60% | −0.363 | +0.061 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.65% | −0.176 | −0.080 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.68% | −0.194 | +0.017 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.10% | −0.344 | +0.115 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.50% | −0.271 | −0.052 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.99% | −0.241 | −0.009 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.83% | −0.233 | −0.094 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.304 | −0.006 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 43.42% | −0.303 | +0.064 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.03% | −0.288 | +0.023 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.331 | +0.458 | |||||
| CYTBCytochrome b | 1,141 bp | 46.01% | −0.257 | −0.003 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 48.53% | −0.059 | +0.215 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 45.56% | −0.046 | +0.275 | |||||
| D-loopControl region (D-loop) | 943 bp | 37.12% | −0.091 | +0.022 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU114
UUC109
Leu L16.4%
UUA113
UUG30
CUU90
CUC105
CUA219
CUG68
Ile I7.6%
AUU183
AUC108
Met M4.4%
AUA115
AUG52
Val V6.1%
GUU58
GUC44
GUA97
GUG34
Ser S6.3%
UCU43
UCC63
UCA67
UCG13
AGU13
AGC42
Pro P5.6%
CCU41
CCC66
CCA98
CCG8
Thr T7.6%
ACU54
ACC86
ACA131
ACG20
Ala A9.3%
GCU73
GCC139
GCA123
GCG20
Tyr Y3.0%
UAU56
UAC59
His H2.8%
CAU37
CAC70
Gln Q2.6%
CAA80
CAG18
Asn N3.0%
AAU44
AAC69
Lys K2.0%
AAA58
AAG18
Asp D2.0%
GAU28
GAC50
Glu E2.8%
GAA80
GAG26
Cys C0.7%
UGU10
UGC16
Trp W3.2%
UGA100
UGG21
Arg R2.0%
CGU12
CGC12
CGA41
CGG11
Gly G6.4%
GGU35
GGC47
GGA117
GGG46
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_008645.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,779 | 1,688 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,854 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,856 | 3,830 | 975 bp | + | 46.2% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,911 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,982 | 4,050 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,095 | 1,045 bp | + | 46.6% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,168 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,170 | 5,238 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,240 | 5,312 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,348 | 5,413 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,415 | 5,486 | 72 bp | − | – |
| COX1 | Protein-coding gene | 5,488 | 7,038 | 1,551 bp | + | 43.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,040 | 7,110 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,114 | 7,187 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,202 | 7,892 | 691 bp | + | 41.7% |
| tRNA-Lys | Transfer RNA | 7,893 | 7,968 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,970 | 8,137 | 168 bp | + | 38.1% |
| ATP6 | Protein-coding gene | 8,128 | 8,811 | 684 bp | + | 40.5% |
| COX3 | Protein-coding gene | 8,811 | 9,595 | 785 bp | + | 46.0% |
| tRNA-Gly | Transfer RNA | 9,596 | 9,667 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,668 | 10,016 | 349 bp | + | 41.8% |
| tRNA-Arg | Transfer RNA | 10,017 | 10,086 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,087 | 10,383 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 10,377 | 11,758 | 1,382 bp | + | 43.4% |
| tRNA-His | Transfer RNA | 11,759 | 11,828 | 70 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 11,829 | 11,896 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,898 | 11,970 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,971 | 13,809 | 1,839 bp | + | 42.0% |
| ND6 | Protein-coding gene | 13,806 | 14,327 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,328 | 14,396 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,401 | 15,541 | 1,141 bp | + | 46.0% |
| tRNA-Thr | Transfer RNA | 15,542 | 15,613 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,613 | 15,683 | 71 bp | − | – |
| D-loop | Control region | 15,684 | 16,626 | 943 bp | – | 37.1% |