Cyclopterus lumpus
Lumpfish
GC content
46.64%
Whole genome
Non-coding
1,675 bp
D-loop 1,131 bp
Where Lumpfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Lumpfish has the 1,356th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,266 bp
- GC skew (G − C) / (G + C)
- −0.246
- AT skew (A − T) / (A + T)
- −0.005
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,266 bp
Protein-coding11,407 bp
12S rRNA944 bp
16S rRNA1,691 bp
All tRNA1,549 bp
D-loop1,131 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.293 | −0.100 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.14% | −0.405 | −0.060 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.13% | −0.198 | −0.127 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.44% | −0.287 | −0.003 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.407 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 49.34% | −0.383 | −0.133 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.05% | −0.268 | −0.100 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.71% | −0.301 | −0.226 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.16% | −0.301 | −0.219 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.79% | −0.297 | −0.101 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.95% | −0.325 | −0.032 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.70% | −0.325 | +0.399 | |||||
| CYTBCytochrome b | 1,141 bp | 47.24% | −0.314 | −0.140 | |||||
| 12S rRNA12S ribosomal RNA | 944 bp | 48.31% | −0.096 | +0.201 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 46.36% | −0.099 | +0.178 | |||||
| D-loopControl region (D-loop) | 1,131 bp | 34.93% | −0.134 | +0.082 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU109
UUC125
Leu L17.6%
UUA112
UUG30
CUU176
CUC147
CUA160
CUG45
Ile I6.4%
AUU117
AUC125
Met M3.9%
AUA85
AUG64
Val V6.5%
GUU71
GUC56
GUA78
GUG42
Ser S6.7%
UCU57
UCC72
UCA45
UCG8
AGU23
AGC49
Pro P5.7%
CCU80
CCC98
CCA30
CCG9
Thr T8.0%
ACU73
ACC129
ACA86
ACG18
Ala A9.4%
GCU100
GCC158
GCA85
GCG13
Tyr Y2.7%
UAU19
UAC84
His H2.7%
CAU34
CAC70
Gln Q2.6%
CAA71
CAG27
Asn N3.0%
AAU27
AAC87
Lys K1.9%
AAA54
AAG18
Asp D1.8%
GAU19
GAC51
Glu E2.7%
GAA73
GAG28
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA86
UGG34
Arg R2.0%
CGU13
CGC16
CGA33
CGG15
Gly G6.3%
GGU20
GGC103
GGA47
GGG69
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_069208.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,012 | 944 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,013 | 1,084 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,085 | 2,775 | 1,691 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,776 | 2,849 | 74 bp | + | – |
| ND1 | Protein-coding gene | 3,333 | 4,307 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 4,312 | 4,381 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,381 | 4,451 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,451 | 4,519 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,520 | 5,565 | 1,046 bp | + | 49.1% |
| tRNA-Trp | Transfer RNA | 5,566 | 5,636 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,638 | 5,706 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,708 | 5,780 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,818 | 5,883 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,884 | 5,952 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,954 | 7,504 | 1,551 bp | + | 47.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,505 | 7,575 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,578 | 7,650 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,656 | 8,346 | 691 bp | + | 45.4% |
| tRNA-Lys | Transfer RNA | 8,347 | 8,420 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,422 | 8,589 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,580 | 9,262 | 683 bp | + | 49.3% |
| COX3 | Protein-coding gene | 9,263 | 10,047 | 785 bp | + | 49.1% |
| tRNA-Gly | Transfer RNA | 10,048 | 10,120 | 73 bp | + | – |
| ND3 | Protein-coding gene | 10,121 | 10,469 | 349 bp | + | 46.7% |
| tRNA-Arg | Transfer RNA | 10,470 | 10,538 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,539 | 10,835 | 297 bp | + | 49.2% |
| ND4 | Protein-coding gene | 10,829 | 12,209 | 1,381 bp | + | 47.8% |
| tRNA-His | Transfer RNA | 12,210 | 12,278 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,279 | 12,346 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,351 | 12,423 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,424 | 14,262 | 1,839 bp | + | 46.0% |
| ND6 | Protein-coding gene | 14,259 | 14,780 | 522 bp | − | 47.7% |
| tRNA-Glu | Transfer RNA | 14,781 | 14,848 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,854 | 15,994 | 1,141 bp | + | 47.2% |
| tRNA-Thr | Transfer RNA | 15,995 | 16,066 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,066 | 16,135 | 70 bp | − | – |
| D-loop | Control region | 16,136 | 17,266 | 1,131 bp | – | 34.9% |