MitoAge

Cynopterus brachyotis

Lesser short-nosed fruit bat

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Maximum lifespan
10.1 yr
AnAge record
mtDNA size
16,701 bp
RefSeq NC_026465.1
GC content
41.88%
Whole genome
Non-coding
1,303 bp
D-loop 1,239 bp

Where Lesser short-nosed fruit bat sits among 2,335 species

Whole-genome GC content against maximum lifespan. Lesser short-nosed fruit bat has the 1,545th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Lesser short-nosed fruit bat
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,701 bp
GC skew (G − C) / (G + C)
−0.324
AT skew (A − T) / (A + T)
+0.115

Life history

Maximum lifespan
10.1 years
Adult weight
45 g
Birth weight
6.2 g
Basal metabolic rate
0.262 W
Body temperature
36.5 °C
Female sexual maturity
213 days
Male sexual maturity
213 days
Gestation or incubation
112 days
Litter or clutch size
1
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02351)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,701 bp
Protein-coding11,352 bp
12S rRNA968 bp
16S rRNA1,571 bp
All tRNA1,514 bp
D-loop1,239 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp29.7%26.5%12.9%31.0%43.83%−0.413+0.058
ND2NADH dehydrogenase subunit 21,043 bp35.7%25.7%9.7%29.0%38.64%−0.499+0.163
COX1Cytochrome c oxidase subunit I1,545 bp25.9%29.2%17.5%27.4%44.92%−0.219−0.060
COX2Cytochrome c oxidase subunit II684 bp32.0%24.6%13.9%29.5%43.42%−0.360+0.132
ATP8ATP synthase F0 subunit 8204 bp37.7%27.5%6.9%27.9%34.80%−0.606+0.158
ATP6ATP synthase F0 subunit 6681 bp30.8%27.0%11.0%31.1%42.14%−0.477+0.066
COX3Cytochrome c oxidase subunit III785 bp27.0%28.4%15.3%29.3%44.59%−0.314−0.025
ND3NADH dehydrogenase subunit 3348 bp29.9%27.9%12.9%29.3%42.24%−0.388+0.035
ND4LNADH dehydrogenase subunit 4L297 bp27.9%30.3%13.8%27.9%41.75%−0.339−0.040
ND4NADH dehydrogenase subunit 41,378 bp32.9%26.3%11.3%29.5%40.86%−0.446+0.112
ND5NADH dehydrogenase subunit 51,818 bp32.8%25.9%11.4%29.9%41.31%−0.449+0.117
ND6NADH dehydrogenase subunit 6528 bp40.3%19.9%7.8%32.0%39.77%−0.610+0.340
CYTBCytochrome b1,140 bp29.7%27.2%13.9%29.1%43.07%−0.352+0.045
12S rRNA12S ribosomal RNA968 bp35.8%21.4%19.7%23.0%42.77%−0.077+0.253
16S rRNA16S ribosomal RNA1,571 bp37.4%23.1%18.1%21.5%39.53%−0.085+0.236
D-loopControl region (D-loop)1,239 bp32.0%23.1%15.3%29.7%44.96%−0.321+0.161

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU83
UUC138
Leu L16.4%
UUA74
UUG30
CUU75
CUC119
CUA268
CUG57
Ile I8.6%
AUU161
AUC164
Met M6.5%
AUA192
AUG54
Val V5.0%
GUU41
GUC35
GUA87
GUG26
Ser S7.7%
UCU36
UCC97
UCA91
UCG10
AGU17
AGC41
Pro P5.2%
CCU32
CCC70
CCA89
CCG7
Thr T8.1%
ACU39
ACC109
ACA147
ACG12
Ala A6.6%
GCU39
GCC110
GCA96
GCG4
Tyr Y3.4%
UAU59
UAC71
His H2.6%
CAU24
CAC76
Gln Q2.4%
CAA81
CAG10
Asn N4.0%
AAU50
AAC101
Lys K2.6%
AAA87
AAG10
Asp D1.8%
GAU21
GAC48
Glu E2.5%
GAA74
GAG21
Cys C0.6%
UGU10
UGC13
Trp W2.7%
UGA95
UGG9
Arg R1.7%
CGU5
CGC9
CGA49
CGG1
Gly G5.7%
GGU22
GGC70
GGA87
GGG38
Stop 0.2%
UAA8
UAG0
AGA0
AGG1

Genome map

38 annotated features in NC_026465.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,038968 bp+42.8%
tRNA-ValTransfer RNA1,0381,10669 bp+–
16S rRNARibosomal RNA1,1072,6771,571 bp+39.5%
tRNA-Leu (CUN)Transfer RNA2,6782,75275 bp+–
ND1Protein-coding gene2,7553,710956 bp+43.8%
tRNA-IleTransfer RNA3,7113,77969 bp+–
tRNA-GlnTransfer RNA3,7773,84973 bp−–
tRNA-MetTransfer RNA3,8503,91869 bp+–
ND2Protein-coding gene3,9194,9611,043 bp+38.6%
tRNA-TrpTransfer RNA4,9615,03070 bp+–
tRNA-AlaTransfer RNA5,0345,10269 bp−–
tRNA-AsnTransfer RNA5,1045,17673 bp−–
tRNA-CysTransfer RNA5,2115,27969 bp−–
tRNA-TyrTransfer RNA5,2815,34666 bp−–
COX1Protein-coding gene5,3486,8921,545 bp+44.9%
tRNA-Ser (UCN)Transfer RNA6,8906,95869 bp−–
tRNA-AspTransfer RNA6,9647,03168 bp+–
COX2Protein-coding gene7,0337,716684 bp+43.4%
tRNA-LysTransfer RNA7,7207,79071 bp+–
ATP8Protein-coding gene7,7927,995204 bp+34.8%
ATP6Protein-coding gene7,9538,633681 bp+42.1%
COX3Protein-coding gene8,6339,417785 bp+44.6%
tRNA-GlyTransfer RNA9,4179,48569 bp+–
ND3Protein-coding gene9,4869,833348 bp+42.2%
tRNA-ArgTransfer RNA9,8419,90868 bp+–
ND4LProtein-coding gene9,90910,205297 bp+41.8%
ND4Protein-coding gene10,19911,5761,378 bp+40.9%
tRNA-HisTransfer RNA11,57711,64569 bp+–
tRNA-Ser (AGY)Transfer RNA11,64611,70358 bp+–
tRNA-Leu (UUR)Transfer RNA11,70511,77470 bp+–
ND5Protein-coding gene11,77513,5921,818 bp+41.3%
ND6Protein-coding gene13,58914,116528 bp−39.8%
tRNA-GluTransfer RNA14,11714,18569 bp−–
CYTBProtein-coding gene14,19015,3291,140 bp+43.1%
tRNA-ThrTransfer RNA15,32915,39769 bp+–
tRNA-ProTransfer RNA15,39715,46266 bp−–
D-loopControl region15,46316,7011,239 bp–45.0%

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