Cynoscion striatus
Striped weakfish
GC content
47.14%
Whole genome
Non-coding
905 bp
D-loop 1 bp
Where Striped weakfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Striped weakfish has the 1,250th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,507 bp
- GC skew (G − C) / (G + C)
- −0.296
- AT skew (A − T) / (A + T)
- +0.025
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,507 bp
Protein-coding11,413 bp
12S rRNA948 bp
16S rRNA1,699 bp
All tRNA1,547 bp
D-loop1 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.31% | −0.367 | −0.115 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.80% | −0.504 | −0.011 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 49.07% | −0.199 | −0.097 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.73% | −0.323 | +0.024 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.507 | +0.192 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.64% | −0.461 | −0.068 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.05% | −0.309 | −0.070 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.43% | −0.352 | −0.191 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.19% | −0.432 | −0.099 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.24% | −0.371 | −0.024 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.28% | −0.422 | +0.024 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.66% | −0.409 | +0.410 | |||||
| CYTBCytochrome b | 1,141 bp | 48.73% | −0.371 | −0.104 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 47.68% | −0.062 | +0.161 | |||||
| 16S rRNA16S ribosomal RNA | 1,699 bp | 46.97% | −0.140 | +0.219 | |||||
| D-loopControl region (D-loop) | 1 bp | 0.00% | – | −1.000 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU98
UUC143
Leu L17.8%
UUA88
UUG19
CUU154
CUC205
CUA158
CUG55
Ile I7.1%
AUU162
AUC109
Met M3.8%
AUA68
AUG78
Val V5.4%
GUU52
GUC71
GUA57
GUG26
Ser S6.0%
UCU38
UCC75
UCA57
UCG6
AGU7
AGC44
Pro P5.8%
CCU48
CCC118
CCA44
CCG10
Thr T8.2%
ACU44
ACC142
ACA117
ACG11
Ala A9.0%
GCU49
GCC189
GCA88
GCG18
Tyr Y2.9%
UAU45
UAC65
His H2.8%
CAU29
CAC78
Gln Q2.6%
CAA83
CAG15
Asn N3.2%
AAU41
AAC79
Lys K1.9%
AAA65
AAG9
Asp D1.9%
GAU17
GAC57
Glu E2.7%
GAA76
GAG26
Cys C0.7%
UGU5
UGC20
Trp W3.2%
UGA107
UGG13
Arg R2.0%
CGU9
CGC21
CGA41
CGG7
Gly G6.5%
GGU26
GGC114
GGA57
GGG49
Stop 0.2%
UAA4
UAG2
AGA1
AGG0
Genome map
38 annotated features in NC_087995.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,787 | 1,699 bp | + | 47.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,788 | 2,861 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,862 | 3,836 | 975 bp | + | 48.3% |
| tRNA-Ile | Transfer RNA | 3,841 | 3,910 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,048 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,094 | 1,046 bp | + | 47.8% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,345 | 5,411 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,412 | 5,481 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,483 | 7,039 | 1,557 bp | + | 49.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,035 | 7,105 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,109 | 7,177 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 45.7% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 46.6% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 49.1% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,648 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 50.4% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,066 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 52.2% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 49.2% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,790 | 1,839 bp | + | 46.3% |
| ND6 | Protein-coding gene | 13,787 | 14,308 | 522 bp | − | 48.7% |
| tRNA-Glu | Transfer RNA | 14,309 | 14,377 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,382 | 15,522 | 1,141 bp | + | 48.7% |
| tRNA-Thr | Transfer RNA | 15,523 | 15,594 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,598 | 15,667 | 70 bp | − | – |
| D-loop | Control region | 15,668 | 15,668 | 1 bp | – | 0.0% |