Cyprinella galactura
Whitetail shiner
GC content
45.12%
Whole genome
Non-coding
1,107 bp
D-loop 1,055 bp
Where Whitetail shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Whitetail shiner has the 2,110th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,714 bp
- GC skew (G − C) / (G + C)
- −0.187
- AT skew (A − T) / (A + T)
- +0.014
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,714 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,685 bp
All tRNA1,562 bp
D-loop1,055 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.69% | −0.200 | −0.090 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.90% | −0.256 | −0.049 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.01% | −0.151 | −0.106 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.56% | −0.143 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.82% | −0.420 | +0.146 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 42.61% | −0.285 | −0.097 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.81% | −0.188 | −0.070 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.55% | −0.276 | −0.056 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.44% | −0.318 | −0.079 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 45.51% | −0.262 | −0.052 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.72% | −0.255 | −0.025 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.08% | −0.291 | +0.321 | |||||
| CYTBCytochrome b | 1,141 bp | 45.05% | −0.272 | −0.056 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 49.63% | −0.053 | +0.216 | |||||
| 16S rRNA16S ribosomal RNA | 1,685 bp | 45.22% | −0.042 | +0.246 | |||||
| D-loopControl region (D-loop) | 1,055 bp | 36.97% | −0.200 | −0.023 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU113
UUC120
Leu L16.4%
UUA110
UUG42
CUU149
CUC88
CUA179
CUG55
Ile I6.9%
AUU156
AUC106
Met M4.5%
AUA96
AUG74
Val V6.6%
GUU63
GUC62
GUA88
GUG37
Ser S6.5%
UCU40
UCC57
UCA76
UCG15
AGU11
AGC47
Pro P5.6%
CCU57
CCC60
CCA82
CCG15
Thr T7.9%
ACU53
ACC120
ACA97
ACG30
Ala A9.2%
GCU68
GCC128
GCA120
GCG33
Tyr Y3.0%
UAU59
UAC54
His H2.8%
CAU46
CAC61
Gln Q2.5%
CAA63
CAG31
Asn N2.9%
AAU48
AAC61
Lys K2.1%
AAA57
AAG23
Asp D2.0%
GAU30
GAC47
Glu E2.6%
GAA61
GAG39
Cys C0.7%
UGU9
UGC17
Trp W3.2%
UGA97
UGG23
Arg R2.1%
CGU9
CGC20
CGA35
CGG14
Gly G6.5%
GGU46
GGC59
GGA79
GGG63
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_033928.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,026 | 957 bp | + | 49.6% |
| tRNA-Val | Transfer RNA | 1,027 | 1,098 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,099 | 2,783 | 1,685 bp | + | 45.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,859 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 47.7% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,911 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,982 | 4,050 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,095 | 1,045 bp | + | 48.9% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,166 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,168 | 5,236 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,238 | 5,310 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,408 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 43.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,178 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 43.6% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,952 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,954 | 8,118 | 165 bp | + | 41.8% |
| ATP6 | Protein-coding gene | 8,112 | 8,794 | 683 bp | + | 42.6% |
| COX3 | Protein-coding gene | 8,795 | 9,578 | 784 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 43.6% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 44.4% |
| ND4 | Protein-coding gene | 10,359 | 11,740 | 1,382 bp | + | 45.5% |
| tRNA-His | Transfer RNA | 11,741 | 11,809 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,810 | 11,878 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,788 | 1,836 bp | + | 44.7% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 48.1% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,593 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,662 | 70 bp | − | – |
| D-loop | Control region | 15,660 | 16,714 | 1,055 bp | – | 37.0% |