Cyprinodon tularosa
White sands pupfish
GC content
46.89%
Whole genome
Non-coding
914 bp
D-loop 833 bp
Where White sands pupfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. White sands pupfish has the 2,010th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,501 bp
- GC skew (G − C) / (G + C)
- −0.266
- AT skew (A − T) / (A + T)
- −0.020
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,501 bp
Protein-coding11,413 bp
12S rRNA945 bp
16S rRNA1,686 bp
All tRNA1,547 bp
D-loop833 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.36% | −0.308 | −0.219 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 50.33% | −0.450 | −0.104 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 46.78% | −0.219 | −0.122 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.30% | −0.284 | +0.016 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.487 | +0.022 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.425 | −0.126 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 48.98% | −0.294 | −0.067 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 49.57% | −0.322 | −0.288 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.378 | −0.181 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.43% | −0.325 | −0.099 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.97% | −0.354 | −0.049 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.47% | −0.447 | +0.316 | |||||
| CYTBCytochrome b | 1,140 bp | 46.67% | −0.282 | −0.095 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 49.52% | −0.107 | +0.178 | |||||
| 16S rRNA16S ribosomal RNA | 1,686 bp | 45.49% | −0.100 | +0.206 | |||||
| D-loopControl region (D-loop) | 833 bp | 38.54% | −0.184 | −0.051 |
Codon usage
Counts per codon, darker is more frequent3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU104
UUC131
Leu L17.7%
UUA73
UUG29
CUU201
CUC171
CUA139
CUG61
Ile I6.6%
AUU159
AUC93
Met M3.8%
AUA64
AUG81
Val V6.3%
GUU77
GUC68
GUA71
GUG25
Ser S6.7%
UCU48
UCC84
UCA52
UCG17
AGU16
AGC40
Pro P5.7%
CCU71
CCC101
CCA39
CCG7
Thr T7.6%
ACU63
ACC107
ACA104
ACG17
Ala A9.1%
GCU63
GCC157
GCA101
GCG26
Tyr Y2.8%
UAU30
UAC77
His H3.0%
CAU29
CAC84
Gln Q2.7%
CAA81
CAG20
Asn N2.9%
AAU43
AAC69
Lys K1.9%
AAA53
AAG20
Asp D2.0%
GAU22
GAC53
Glu E2.6%
GAA75
GAG23
Cys C0.8%
UGU15
UGC14
Trp W3.1%
UGA93
UGG27
Arg R2.0%
CGU11
CGC18
CGA34
CGG12
Gly G6.2%
GGU31
GGC101
GGA61
GGG44
Stop 0.3%
UAA9
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_028292.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 49.5% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,771 | 1,686 bp | + | 45.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,772 | 2,845 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,846 | 3,820 | 975 bp | + | 50.4% |
| tRNA-Ile | Transfer RNA | 3,826 | 3,895 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,895 | 3,965 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,965 | 4,033 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,034 | 5,080 | 1,047 bp | + | 50.3% |
| tRNA-Trp | Transfer RNA | 5,080 | 5,151 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,154 | 5,222 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,224 | 5,296 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,334 | 5,399 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,470 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,472 | 7,025 | 1,554 bp | + | 46.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,108 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,112 | 7,181 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 45.3% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 8,793 | 9,578 | 786 bp | + | 49.0% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 10,000 | 351 bp | + | 49.6% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,067 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 47.4% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,885 | 11,957 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,958 | 13,796 | 1,839 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,793 | 14,314 | 522 bp | − | 48.5% |
| tRNA-Glu | Transfer RNA | 14,315 | 14,382 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,387 | 15,526 | 1,140 bp | + | 46.7% |
| tRNA-Thr | Transfer RNA | 15,528 | 15,599 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,599 | 15,668 | 70 bp | − | – |
| D-loop | Control region | 15,669 | 16,501 | 833 bp | – | 38.5% |