Cyprinus carpio

Common carp

Maximum lifespan

47 yr

AnAge record

mtDNA size

16,575 bp

RefSeq NC_001606.1

GC content

43.26%

Whole genome

Non-coding

995 bp

Including the D-loop

Where Common carp sits among 2,335 species

Whole-genome GC content against maximum lifespan. Common carp has the 172nd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,575 bp

GC skew (G − C) / (G + C): −0.269
AT skew (A − T) / (A + T): +0.123

Life history

Maximum lifespan: 47 years
Adult weight: 10.6 kg
Female sexual maturity: 3 years
Male sexual maturity: 3 years
Gestation or incubation: 4 days
Litter or clutch size: 300,000

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03899)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, large sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,575 bp

Protein-coding11,393 bp

12S rRNA951 bp

16S rRNA1,681 bp

All tRNA1,560 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Cyprinus carpio genes

ND1NADH dehydrogenase subunit 1	975 bp	30.8%	24.8%	14.1%	30.4%	44.41%	−0.367	+0.107
ND2NADH dehydrogenase subunit 2	1,047 bp	33.5%	21.7%	13.1%	31.7%	44.80%	−0.416	+0.215
COX1Cytochrome c oxidase subunit I	1,551 bp	27.4%	28.4%	17.6%	26.6%	44.23%	−0.204	−0.017
COX2Cytochrome c oxidase subunit II	691 bp	30.4%	26.5%	16.6%	26.5%	43.13%	−0.228	+0.069
ATP8ATP synthase F0 subunit 8	165 bp	35.2%	29.1%	11.5%	24.2%	35.76%	−0.356	+0.094
ATP6ATP synthase F0 subunit 6	684 bp	31.1%	27.3%	13.3%	28.2%	41.52%	−0.359	+0.065
COX3Cytochrome c oxidase subunit III	786 bp	28.9%	27.1%	15.8%	28.2%	44.02%	−0.283	+0.032
ND3NADH dehydrogenase subunit 3	351 bp	29.6%	26.8%	14.2%	29.3%	43.59%	−0.346	+0.051
ND4LNADH dehydrogenase subunit 4L	297 bp	26.3%	27.9%	15.8%	30.0%	45.79%	−0.309	−0.031
ND4NADH dehydrogenase subunit 4	1,381 bp	31.0%	26.1%	13.9%	29.0%	42.94%	−0.352	+0.086
ND5NADH dehydrogenase subunit 5	1,824 bp	33.0%	24.6%	12.7%	29.7%	42.43%	−0.401	+0.147
ND6NADH dehydrogenase subunit 6	519 bp	42.2%	14.1%	12.1%	31.6%	43.74%	−0.445	+0.500
CYTBCytochrome b	1,141 bp	29.7%	26.2%	14.1%	30.0%	44.08%	−0.360	+0.063
12S rRNA12S ribosomal RNA	951 bp	32.5%	19.1%	21.5%	26.9%	48.37%	−0.113	+0.259
16S rRNA16S ribosomal RNA	1,681 bp	36.6%	19.9%	19.9%	23.6%	43.55%	−0.085	+0.296

Codon usage

Counts per codon, darker is more frequent

Gene

3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%

UUU76

UUC146

Leu L16.5%

UUA100

UUG11

CUU82

CUC99

CUA297

CUG37

Ile I7.7%

AUU157

AUC137

Met M4.6%

AUA126

AUG49

Val V6.0%

GUU58

GUC33

GUA118

GUG18

Ser S6.1%

UCU29

UCC57

UCA82

UCG9

AGU9

AGC46

Pro P5.6%

CCU33

CCC52

CCA115

CCG12

Thr T7.9%

ACU42

ACC104

ACA146

ACG8

Ala A8.9%

GCU55

GCC144

GCA129

GCG10

Tyr Y3.0%

UAU50

UAC65

His H2.7%

CAU23

CAC81

Gln Q2.6%

CAA98

CAG1

Asn N3.2%

AAU45

AAC76

Lys K2.1%

AAA73

AAG6

Asp D2.0%

GAU11

GAC64

Glu E2.7%

GAA94

GAG8

Cys C0.7%

UGU5

UGC20

Trp W3.2%

UGA112

UGG8

Arg R2.1%

CGU9

CGC15

CGA45

CGG10

Gly G6.5%

GGU32

GGC44

GGA137

GGG35

Stop 0.3%

UAA7

UAG3

AGA0

AGG0

Genome map

37 annotated features in NC_001606.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 37 features as a table

Annotated features of Cyprinus carpio (NC_001606.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	929	997	69 bp	+	–
12S rRNA	Ribosomal RNA	998	1,948	951 bp	+	48.4%
tRNA-Val	Transfer RNA	1,949	2,020	72 bp	+	–
16S rRNA	Ribosomal RNA	2,021	3,701	1,681 bp	+	43.6%
tRNA-Leu (UUR)	Transfer RNA	3,702	3,778	77 bp	+	–
ND1	Protein-coding gene	3,779	4,753	975 bp	+	44.4%
tRNA-Ile	Transfer RNA	4,757	4,829	73 bp	+	–
tRNA-Gln	Transfer RNA	4,827	4,897	71 bp	−	–
tRNA-Met	Transfer RNA	4,900	4,968	69 bp	+	–
ND2	Protein-coding gene	4,969	6,015	1,047 bp	+	44.8%
tRNA-Trp	Transfer RNA	6,014	6,084	71 bp	+	–
tRNA-Ala	Transfer RNA	6,087	6,154	68 bp	−	–
tRNA-Asn	Transfer RNA	6,156	6,228	73 bp	−	–
tRNA-Cys	Transfer RNA	6,261	6,329	69 bp	−	–
tRNA-Tyr	Transfer RNA	6,328	6,397	70 bp	−	–
COX1	Protein-coding gene	6,399	7,949	1,551 bp	+	44.2%
tRNA-Ser (UCN)	Transfer RNA	7,950	8,020	71 bp	−	–
tRNA-Asp	Transfer RNA	8,024	8,095	72 bp	+	–
COX2	Protein-coding gene	8,109	8,799	691 bp	+	43.1%
tRNA-Lys	Transfer RNA	8,800	8,875	76 bp	+	–
ATP8	Protein-coding gene	8,877	9,041	165 bp	+	35.8%
ATP6	Protein-coding gene	9,035	9,718	684 bp	+	41.5%
COX3	Protein-coding gene	9,718	10,503	786 bp	+	44.0%
tRNA-Gly	Transfer RNA	10,503	10,574	72 bp	+	–
ND3	Protein-coding gene	10,575	10,925	351 bp	+	43.6%
tRNA-Arg	Transfer RNA	10,924	10,993	70 bp	+	–
ND4L	Protein-coding gene	10,994	11,290	297 bp	+	45.8%
ND4	Protein-coding gene	11,284	12,664	1,381 bp	+	42.9%
tRNA-His	Transfer RNA	12,665	12,733	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	12,734	12,802	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	12,804	12,876	73 bp	+	–
ND5	Protein-coding gene	12,880	14,703	1,824 bp	+	42.4%
ND6	Protein-coding gene	14,700	15,218	519 bp	−	43.7%
tRNA-Glu	Transfer RNA	15,219	15,287	69 bp	−	–
CYTB	Protein-coding gene	15,293	16,433	1,141 bp	+	44.1%
tRNA-Thr	Transfer RNA	16,434	16,505	72 bp	+	–
tRNA-Pro	Transfer RNA	16,504	16,575	72 bp	−	–