Dactylopsila trivirgata

Striped possum

Maximum lifespan

9.6 yr

AnAge record

mtDNA size

16,058 bp

RefSeq NC_008134.1

GC content

38.39%

Whole genome

Non-coding

721 bp

D-loop 596 bp

Where Striped possum sits among 2,335 species

Whole-genome GC content against maximum lifespan. Striped possum has the 1,625th longest lifespan of them.

This species
Other mammals
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,058 bp

GC skew (G − C) / (G + C): −0.341
AT skew (A − T) / (A + T): +0.109

Life history

Maximum lifespan: 9.6 years
Adult weight: 318 g
Litter or clutch size: 1.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02551)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,058 bp

Protein-coding11,334 bp

12S rRNA948 bp

16S rRNA1,577 bp

All tRNA1,484 bp

D-loop596 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Dactylopsila trivirgata genes

ND1NADH dehydrogenase subunit 1	957 bp	32.4%	28.0%	11.2%	28.4%	39.60%	−0.435	+0.073
ND2NADH dehydrogenase subunit 2	1,047 bp	35.0%	27.0%	8.7%	29.3%	38.01%	−0.543	+0.128
COX1Cytochrome c oxidase subunit I	1,542 bp	28.7%	31.5%	16.3%	23.5%	39.82%	−0.179	−0.047
COX2Cytochrome c oxidase subunit II	685 bp	33.4%	28.5%	14.5%	23.6%	38.10%	−0.241	+0.080
ATP8ATP synthase F0 subunit 8	210 bp	37.1%	29.0%	7.1%	26.7%	33.81%	−0.577	+0.122
ATP6ATP synthase F0 subunit 6	681 bp	33.2%	30.0%	10.1%	26.7%	36.86%	−0.450	+0.051
COX3Cytochrome c oxidase subunit III	784 bp	29.3%	30.5%	14.7%	25.5%	40.18%	−0.270	−0.019
ND3NADH dehydrogenase subunit 3	352 bp	31.8%	28.7%	10.2%	29.3%	39.49%	−0.482	+0.052
ND4LNADH dehydrogenase subunit 4L	297 bp	30.6%	30.3%	11.8%	27.3%	39.06%	−0.397	+0.006
ND4NADH dehydrogenase subunit 4	1,378 bp	32.7%	27.9%	10.2%	29.2%	39.48%	−0.482	+0.079
ND5NADH dehydrogenase subunit 5	1,809 bp	34.3%	27.3%	10.3%	28.1%	38.42%	−0.462	+0.115
ND6NADH dehydrogenase subunit 6	504 bp	44.6%	18.7%	8.7%	28.0%	36.71%	−0.524	+0.411
CYTBCytochrome b	1,146 bp	30.9%	26.9%	13.0%	29.2%	42.23%	−0.384	+0.069
12S rRNA12S ribosomal RNA	948 bp	36.3%	23.7%	18.0%	21.9%	39.98%	−0.098	+0.209
16S rRNA16S ribosomal RNA	1,577 bp	39.0%	24.2%	15.7%	21.1%	36.84%	−0.146	+0.235
D-loopControl region (D-loop)	596 bp	40.1%	27.0%	9.2%	23.7%	32.89%	−0.439	+0.195

Codon usage

Counts per codon, darker is more frequent

Gene

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%

UUU107

UUC115

Leu L15.7%

UUA115

UUG21

CUU61

CUC79

CUA300

CUG20

Ile I9.6%

AUU185

AUC179

Met M5.8%

AUA182

AUG38

Val V4.6%

GUU34

GUC34

GUA94

GUG11

Ser S7.6%

UCU43

UCC62

UCA133

UCG3

AGU17

AGC31

Pro P5.1%

CCU40

CCC35

CCA114

CCG4

Thr T8.3%

ACU73

ACC90

ACA143

ACG10

Ala A6.5%

GCU66

GCC97

GCA80

GCG2

Tyr Y3.6%

UAU53

UAC84

His H3.0%

CAU43

CAC72

Gln Q2.3%

CAA81

CAG7

Asn N4.1%

AAU57

AAC98

Lys K2.5%

AAA84

AAG11

Asp D1.8%

GAU34

GAC33

Glu E2.4%

GAA82

GAG10

Cys C0.9%

UGU13

UGC20

Trp W2.7%

UGA94

UGG10

Arg R1.7%

CGU12

CGC7

CGA44

CGG2

Gly G5.7%

GGU39

GGC63

GGA93

GGG23

Stop 0.2%

UAA7

UAG1

AGA1

AGG0

Genome map

38 annotated features in NC_008134.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Dactylopsila trivirgata (NC_008134.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	71	1,018	948 bp	+	40.0%
tRNA-Val	Transfer RNA	1,020	1,087	68 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,664	1,577 bp	+	36.8%
tRNA-Leu (UUR)	Transfer RNA	2,665	2,738	74 bp	+	–
ND1	Protein-coding gene	2,740	3,696	957 bp	+	39.6%
tRNA-Ile	Transfer RNA	3,697	3,762	66 bp	+	–
tRNA-Gln	Transfer RNA	3,760	3,832	73 bp	−	–
tRNA-Met	Transfer RNA	3,832	3,890	59 bp	+	–
ND2	Protein-coding gene	3,901	4,947	1,047 bp	+	38.0%
tRNA-Ala	Transfer RNA	4,946	5,013	68 bp	+	–
tRNA-Cys	Transfer RNA	5,024	5,086	63 bp	−	–
tRNA-Trp	Transfer RNA	5,091	5,162	72 bp	+	–
tRNA-Asn	Transfer RNA	5,241	5,312	72 bp	−	–
tRNA-Tyr	Transfer RNA	5,314	5,381	68 bp	−	–
COX1	Protein-coding gene	5,383	6,924	1,542 bp	+	39.8%
tRNA-Ser (UCN)	Transfer RNA	6,927	6,995	69 bp	−	–
tRNA-Asp	Transfer RNA	6,998	7,067	70 bp	+	–
COX2	Protein-coding gene	7,069	7,753	685 bp	+	38.1%
tRNA-Lys	Transfer RNA	7,751	7,816	66 bp	+	–
ATP8	Protein-coding gene	7,817	8,026	210 bp	+	33.8%
ATP6	Protein-coding gene	7,981	8,661	681 bp	+	36.9%
COX3	Protein-coding gene	8,661	9,444	784 bp	+	40.2%
tRNA-Gly	Transfer RNA	9,445	9,510	66 bp	+	–
ND3	Protein-coding gene	9,511	9,862	352 bp	+	39.5%
tRNA-Arg	Transfer RNA	9,863	9,931	69 bp	+	–
ND4L	Protein-coding gene	9,932	10,228	297 bp	+	39.1%
ND4	Protein-coding gene	10,222	11,599	1,378 bp	+	39.5%
tRNA-His	Transfer RNA	11,600	11,668	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,669	11,726	58 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,725	11,796	72 bp	+	–
ND5	Protein-coding gene	11,797	13,605	1,809 bp	+	38.4%
ND6	Protein-coding gene	13,602	14,105	504 bp	−	36.7%
tRNA-Glu	Transfer RNA	14,105	14,174	70 bp	−	–
CYTB	Protein-coding gene	14,180	15,325	1,146 bp	+	42.2%
tRNA-Thr	Transfer RNA	15,333	15,394	62 bp	+	–
tRNA-Pro	Transfer RNA	15,395	15,462	68 bp	−	–
D-loop	Control region	15,463	16,058	596 bp	–	32.9%