Dasycottus setiger
Spinyhead sculpin
GC content
45.32%
Whole genome
Non-coding
1,569 bp
D-loop 1,502 bp
Where Spinyhead sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Spinyhead sculpin has the 1,518th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,168 bp
- GC skew (G − C) / (G + C)
- −0.270
- AT skew (A − T) / (A + T)
- +0.001
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,168 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,694 bp
All tRNA1,551 bp
D-loop1,502 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.69% | −0.320 | −0.110 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.14% | −0.447 | −0.026 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.78% | −0.197 | −0.122 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.287 | +0.003 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.400 | +0.136 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 49.63% | −0.410 | −0.105 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.26% | −0.288 | −0.063 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.43% | −0.330 | −0.202 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.333 | −0.120 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.84% | −0.333 | −0.104 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.90% | −0.384 | +0.001 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.437 | +0.430 | |||||
| CYTBCytochrome b | 1,141 bp | 48.29% | −0.347 | −0.119 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 47.94% | −0.079 | +0.209 | |||||
| 16S rRNA16S ribosomal RNA | 1,694 bp | 45.93% | −0.085 | +0.190 | |||||
| D-loopControl region (D-loop) | 1,502 bp | 29.29% | −0.223 | −0.053 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU111
UUC118
Leu L17.4%
UUA93
UUG28
CUU168
CUC161
CUA162
CUG49
Ile I7.0%
AUU147
AUC121
Met M3.9%
AUA89
AUG59
Val V6.0%
GUU71
GUC49
GUA75
GUG33
Ser S6.5%
UCU56
UCC73
UCA48
UCG10
AGU14
AGC45
Pro P5.7%
CCU56
CCC123
CCA31
CCG8
Thr T8.3%
ACU65
ACC138
ACA96
ACG15
Ala A9.1%
GCU81
GCC169
GCA89
GCG7
Tyr Y2.8%
UAU41
UAC67
His H2.8%
CAU24
CAC82
Gln Q2.6%
CAA85
CAG15
Asn N3.0%
AAU41
AAC72
Lys K1.9%
AAA63
AAG8
Asp D1.9%
GAU25
GAC49
Glu E2.6%
GAA73
GAG26
Cys C0.6%
UGU8
UGC16
Trp W3.2%
UGA92
UGG28
Arg R2.0%
CGU14
CGC18
CGA39
CGG7
Gly G6.5%
GGU39
GGC84
GGA65
GGG61
Stop 0.2%
UAA3
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_058017.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 47.9% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,781 | 1,694 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,855 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,856 | 3,830 | 975 bp | + | 47.7% |
| tRNA-Ile | Transfer RNA | 3,835 | 3,904 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,974 | 4,042 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,088 | 1,046 bp | + | 49.1% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,159 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,407 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,411 | 5,480 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 45.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,951 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,120 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,111 | 8,793 | 683 bp | + | 49.6% |
| COX3 | Protein-coding gene | 8,794 | 9,578 | 785 bp | + | 47.3% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,651 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,652 | 10,000 | 349 bp | + | 50.4% |
| tRNA-Arg | Transfer RNA | 10,001 | 10,069 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,070 | 10,366 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,360 | 11,740 | 1,381 bp | + | 45.8% |
| tRNA-His | Transfer RNA | 11,741 | 11,809 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,810 | 11,877 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,882 | 11,954 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,955 | 13,793 | 1,839 bp | + | 45.9% |
| ND6 | Protein-coding gene | 13,790 | 14,311 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,312 | 14,380 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,385 | 15,525 | 1,141 bp | + | 48.3% |
| tRNA-Thr | Transfer RNA | 15,526 | 15,597 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |
| D-loop | Control region | 15,667 | 17,168 | 1,502 bp | – | 29.3% |