Diplodus cervinus
Zebra seabream
GC content
45.86%
Whole genome
Non-coding
948 bp
D-loop 888 bp
Where Zebra seabream sits among 2,335 species
Whole-genome GC content against maximum lifespan. Zebra seabream has the 338th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,559 bp
- GC skew (G − C) / (G + C)
- −0.278
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,559 bp
Protein-coding11,422 bp
12S rRNA952 bp
16S rRNA1,696 bp
All tRNA1,554 bp
D-loop888 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.00% | −0.372 | −0.112 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.66% | −0.462 | −0.002 | |||||
| COX1Cytochrome c oxidase subunit I | 1,566 bp | 44.57% | −0.178 | −0.099 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.57% | −0.234 | +0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 43.64% | −0.500 | +0.032 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.30% | −0.432 | −0.102 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.12% | −0.287 | −0.059 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.71% | −0.400 | −0.207 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.413 | −0.116 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.27% | −0.340 | −0.049 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.24% | −0.401 | +0.029 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.59% | −0.420 | +0.437 | |||||
| CYTBCytochrome b | 1,141 bp | 45.75% | −0.326 | −0.076 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 48.63% | −0.063 | +0.162 | |||||
| 16S rRNA16S ribosomal RNA | 1,696 bp | 45.76% | −0.088 | +0.220 | |||||
| D-loopControl region (D-loop) | 888 bp | 38.85% | −0.241 | −0.017 |
Codon usage
Counts per codon, darker is more frequent3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU109
UUC124
Leu L17.5%
UUA95
UUG21
CUU159
CUC195
CUA151
CUG45
Ile I7.2%
AUU160
AUC114
Met M4.0%
AUA93
AUG61
Val V5.8%
GUU62
GUC77
GUA61
GUG22
Ser S7.0%
UCU51
UCC81
UCA61
UCG12
AGU9
AGC51
Pro P5.6%
CCU49
CCC85
CCA68
CCG13
Thr T7.4%
ACU62
ACC105
ACA105
ACG11
Ala A9.2%
GCU83
GCC142
GCA112
GCG14
Tyr Y2.9%
UAU39
UAC71
His H2.8%
CAU25
CAC81
Gln Q2.5%
CAA80
CAG14
Asn N2.9%
AAU45
AAC67
Lys K2.0%
AAA70
AAG6
Asp D2.0%
GAU15
GAC61
Glu E2.7%
GAA86
GAG15
Cys C0.7%
UGU10
UGC16
Trp W3.1%
UGA106
UGG13
Arg R2.0%
CGU13
CGC16
CGA40
CGG8
Gly G6.4%
GGU40
GGC67
GGA95
GGG42
Stop 0.2%
UAA3
UAG3
AGA0
AGG1
Genome map
38 annotated features in NC_064339.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,788 | 1,696 bp | + | 45.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,789 | 2,861 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,862 | 3,836 | 975 bp | + | 48.0% |
| tRNA-Ile | Transfer RNA | 3,841 | 3,910 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,049 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,095 | 1,046 bp | + | 48.7% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,165 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,239 | 5,311 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,344 | 5,410 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,411 | 5,480 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,047 | 1,566 bp | + | 44.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,035 | 7,105 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,109 | 7,181 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 44.6% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,116 | 165 bp | + | 43.6% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 44.3% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 46.1% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 48.7% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,069 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,071 | 10,367 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,361 | 11,741 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,742 | 11,810 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,878 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,885 | 11,957 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,958 | 13,796 | 1,839 bp | + | 45.2% |
| ND6 | Protein-coding gene | 13,793 | 14,314 | 522 bp | − | 45.6% |
| tRNA-Glu | Transfer RNA | 14,315 | 14,383 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,388 | 15,528 | 1,141 bp | + | 45.8% |
| tRNA-Thr | Transfer RNA | 15,529 | 15,600 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,600 | 15,671 | 72 bp | − | – |
| D-loop | Control region | 15,672 | 16,559 | 888 bp | – | 38.9% |