Dissostichus eleginoides
Patagonian toothfish
GC content
48.43%
Whole genome
Non-coding
3,027 bp
D-loop 2,009 bp
Where Patagonian toothfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Patagonian toothfish has the 148th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome18,704 bp
- GC skew (G − C) / (G + C)
- −0.237
- AT skew (A − T) / (A + T)
- −0.003
About this record
- Lifespan source
- AnAge build 15
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome18,704 bp
Protein-coding11,417 bp
12S rRNA951 bp
16S rRNA1,694 bp
All tRNA1,615 bp
D-loop2,009 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.56% | −0.294 | −0.141 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 54.11% | −0.339 | −0.067 | |||||
| COX1Cytochrome c oxidase subunit I | 1,549 bp | 48.10% | −0.230 | −0.109 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.61% | −0.277 | −0.011 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.413 | +0.032 | |||||
| ATP6ATP synthase F0 subunit 6 | 696 bp | 48.28% | −0.315 | −0.128 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.05% | −0.247 | −0.065 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.28% | −0.337 | −0.254 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.297 | −0.181 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 50.11% | −0.303 | −0.106 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 48.99% | −0.312 | −0.026 | |||||
| ND6NADH dehydrogenase subunit 6 | 507 bp | 55.03% | −0.384 | +0.307 | |||||
| CYTBCytochrome b | 1,141 bp | 51.80% | −0.286 | −0.124 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 47.42% | −0.038 | +0.156 | |||||
| 16S rRNA16S ribosomal RNA | 1,694 bp | 47.34% | −0.097 | +0.211 | |||||
| D-loopControl region (D-loop) | 2,009 bp | 42.36% | −0.199 | −0.022 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU108
UUC121
Leu L17.2%
UUA68
UUG43
CUU142
CUC186
CUA134
CUG83
Ile I6.6%
AUU138
AUC115
Met M3.8%
AUA74
AUG71
Val V6.4%
GUU56
GUC76
GUA63
GUG47
Ser S6.3%
UCU46
UCC77
UCA42
UCG16
AGU16
AGC43
Pro P5.8%
CCU46
CCC125
CCA38
CCG11
Thr T7.5%
ACU49
ACC134
ACA83
ACG21
Ala A9.9%
GCU65
GCC174
GCA108
GCG31
Tyr Y3.0%
UAU32
UAC82
His H2.7%
CAU26
CAC77
Gln Q2.7%
CAA77
CAG27
Asn N2.7%
AAU33
AAC71
Lys K2.0%
AAA49
AAG29
Asp D2.0%
GAU15
GAC63
Glu E2.5%
GAA50
GAG44
Cys C0.8%
UGU13
UGC18
Trp W3.0%
UGA80
UGG36
Arg R2.1%
CGU9
CGC21
CGA34
CGG15
Gly G6.5%
GGU26
GGC99
GGA59
GGG64
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
40 annotated features in NC_018135.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA23
- D-loop2
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 40 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| ND1 | Protein-coding gene | 1 | 975 | 975 bp | + | 50.6% |
| tRNA-Ile | Transfer RNA | 980 | 1,049 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 1,049 | 1,120 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 1,120 | 1,188 | 69 bp | + | – |
| ND2 | Protein-coding gene | 1,189 | 2,234 | 1,046 bp | + | 54.1% |
| tRNA-Trp | Transfer RNA | 2,235 | 2,305 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 2,307 | 2,375 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 2,377 | 2,449 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 2,485 | 2,552 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 2,553 | 2,623 | 71 bp | − | – |
| COX1 | Protein-coding gene | 2,624 | 4,172 | 1,549 bp | + | 48.1% |
| tRNA-Ser (UCN) | Transfer RNA | 4,175 | 4,245 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 4,247 | 4,317 | 71 bp | + | – |
| COX2 | Protein-coding gene | 4,320 | 5,010 | 691 bp | + | 47.6% |
| tRNA-Lys | Transfer RNA | 5,013 | 5,086 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 5,088 | 5,255 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 5,256 | 5,951 | 696 bp | + | 48.3% |
| COX3 | Protein-coding gene | 5,999 | 6,783 | 785 bp | + | 49.1% |
| tRNA-Gly | Transfer RNA | 6,784 | 6,853 | 70 bp | + | – |
| ND3 | Protein-coding gene | 6,854 | 7,202 | 349 bp | + | 49.3% |
| tRNA-Arg | Transfer RNA | 7,203 | 7,271 | 69 bp | + | – |
| ND4L | Protein-coding gene | 7,272 | 7,568 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 7,562 | 8,942 | 1,381 bp | + | 50.1% |
| tRNA-His | Transfer RNA | 8,943 | 9,011 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 9,012 | 9,078 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 9,083 | 9,155 | 73 bp | + | – |
| ND5 | Protein-coding gene | 9,156 | 10,994 | 1,839 bp | + | 49.0% |
| CYTB | Protein-coding gene | 11,078 | 12,218 | 1,141 bp | + | 51.8% |
| tRNA-Thr | Transfer RNA | 12,219 | 12,290 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 12,290 | 12,359 | 70 bp | − | – |
| D-loop | Control region | 12,360 | 13,257 | 898 bp | – | 42.4% |
| ND6 | Protein-coding gene | 13,258 | 13,764 | 507 bp | − | 55.0% |
| tRNA-Lys | Transfer RNA | 13,765 | 13,830 | 66 bp | − | – |
| tRNA-Glu | Transfer RNA | 14,666 | 14,734 | 69 bp | − | – |
| D-loop | Control region | 14,735 | 15,845 | 1,111 bp | – | 42.4% |
| tRNA-Phe | Transfer RNA | 15,846 | 15,913 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 15,914 | 16,864 | 951 bp | + | 47.4% |
| tRNA-Val | Transfer RNA | 16,865 | 16,936 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 16,937 | 18,630 | 1,694 bp | + | 47.3% |
| tRNA-Leu (UUR) | Transfer RNA | 18,631 | 18,704 | 74 bp | + | – |