Dorosoma cepedianum

American gizzard shad

Maximum lifespan

6 yr

AnAge record

mtDNA size

16,704 bp

RefSeq NC_008107.1

GC content

47.02%

Whole genome

Non-coding

1,114 bp

Including the D-loop

Where American gizzard shad sits among 2,335 species

Whole-genome GC content against maximum lifespan. American gizzard shad has the 1,898th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,704 bp

GC skew (G − C) / (G + C): −0.233
AT skew (A − T) / (A + T): +0.052

Life history

Maximum lifespan: 6 years
Adult weight: 1.1 kg
Female sexual maturity: 2 years
Male sexual maturity: 2 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03839)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,704 bp

Protein-coding11,404 bp

12S rRNA952 bp

16S rRNA1,684 bp

All tRNA1,551 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Dorosoma cepedianum genes

ND1NADH dehydrogenase subunit 1	975 bp	23.1%	26.2%	17.5%	33.2%	50.77%	−0.309	−0.063
ND2NADH dehydrogenase subunit 2	1,046 bp	27.7%	23.8%	14.1%	34.4%	48.47%	−0.420	+0.076
COX1Cytochrome c oxidase subunit I	1,551 bp	24.0%	28.2%	20.1%	27.7%	47.78%	−0.158	−0.079
COX2Cytochrome c oxidase subunit II	691 bp	27.6%	25.5%	17.8%	29.1%	46.89%	−0.241	+0.041
ATP8ATP synthase F0 subunit 8	168 bp	31.0%	27.4%	13.1%	28.6%	41.67%	−0.371	+0.061
ATP6ATP synthase F0 subunit 6	683 bp	25.5%	28.1%	14.6%	31.8%	46.41%	−0.369	−0.049
COX3Cytochrome c oxidase subunit III	785 bp	23.7%	26.8%	18.1%	31.5%	49.55%	−0.270	−0.061
ND3NADH dehydrogenase subunit 3	349 bp	22.9%	30.9%	16.9%	29.2%	46.13%	−0.267	−0.149
ND4LNADH dehydrogenase subunit 4L	297 bp	21.9%	25.3%	19.2%	33.7%	52.86%	−0.274	−0.071
ND4NADH dehydrogenase subunit 4	1,381 bp	26.3%	26.2%	17.6%	29.9%	47.50%	−0.259	+0.001
ND5NADH dehydrogenase subunit 5	1,836 bp	27.7%	26.5%	15.1%	30.7%	45.81%	−0.339	+0.021
ND6NADH dehydrogenase subunit 6	522 bp	39.1%	16.3%	14.4%	30.3%	44.64%	−0.356	+0.412
CYTBCytochrome b	1,141 bp	25.8%	28.5%	16.4%	29.4%	45.75%	−0.284	−0.050
12S rRNA12S ribosomal RNA	952 bp	29.0%	19.6%	23.5%	27.8%	51.37%	−0.084	+0.192
16S rRNA16S ribosomal RNA	1,684 bp	32.9%	18.9%	21.7%	26.4%	48.16%	−0.097	+0.269

Codon usage

Counts per codon, darker is more frequent

Gene

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU120

UUC115

Leu L16.4%

UUA83

UUG24

CUU138

CUC127

CUA175

CUG76

Ile I6.9%

AUU151

AUC112

Met M4.2%

AUA75

AUG83

Val V6.5%

GUU59

GUC65

GUA88

GUG34

Ser S6.1%

UCU37

UCC71

UCA59

UCG12

AGU10

AGC43

Pro P5.7%

CCU35

CCC108

CCA62

CCG13

Thr T8.3%

ACU56

ACC134

ACA100

ACG26

Ala A9.5%

GCU43

GCC180

GCA117

GCG20

Tyr Y3.0%

UAU40

UAC73

His H2.8%

CAU23

CAC82

Gln Q2.4%

CAA75

CAG18

Asn N2.9%

AAU46

AAC65

Lys K2.0%

AAA66

AAG10

Asp D2.0%

GAU12

GAC66

Glu E2.7%

GAA76

GAG26

Cys C0.7%

UGU11

UGC17

Trp W3.1%

UGA98

UGG20

Arg R2.0%

CGU4

CGC14

CGA45

CGG14

Gly G6.5%

GGU23

GGC60

GGA99

GGG65

Stop 0.2%

UAA4

UAG2

AGA0

AGG0

Genome map

37 annotated features in NC_008107.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 37 features as a table

Annotated features of Dorosoma cepedianum (NC_008107.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,020	952 bp	+	51.4%
tRNA-Val	Transfer RNA	1,021	1,092	72 bp	+	–
16S rRNA	Ribosomal RNA	1,093	2,776	1,684 bp	+	48.2%
tRNA-Leu (UUR)	Transfer RNA	2,776	2,851	76 bp	+	–
ND1	Protein-coding gene	2,852	3,826	975 bp	+	50.8%
tRNA-Ile	Transfer RNA	3,837	3,908	72 bp	+	–
tRNA-Gln	Transfer RNA	3,908	3,978	71 bp	−	–
tRNA-Met	Transfer RNA	3,978	4,046	69 bp	+	–
ND2	Protein-coding gene	4,047	5,092	1,046 bp	+	48.5%
tRNA-Trp	Transfer RNA	5,093	5,164	72 bp	+	–
tRNA-Ala	Transfer RNA	5,168	5,234	67 bp	−	–
tRNA-Asn	Transfer RNA	5,235	5,308	74 bp	−	–
tRNA-Cys	Transfer RNA	5,342	5,407	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,410	5,481	72 bp	−	–
COX1	Protein-coding gene	5,483	7,033	1,551 bp	+	47.8%
tRNA-Ser (UCN)	Transfer RNA	7,034	7,104	71 bp	−	–
tRNA-Asp	Transfer RNA	7,109	7,177	69 bp	+	–
COX2	Protein-coding gene	7,190	7,880	691 bp	+	46.9%
tRNA-Lys	Transfer RNA	7,881	7,954	74 bp	+	–
ATP8	Protein-coding gene	7,956	8,123	168 bp	+	41.7%
ATP6	Protein-coding gene	8,114	8,796	683 bp	+	46.4%
COX3	Protein-coding gene	8,797	9,581	785 bp	+	49.6%
tRNA-Gly	Transfer RNA	9,582	9,653	72 bp	+	–
ND3	Protein-coding gene	9,654	10,002	349 bp	+	46.1%
tRNA-Arg	Transfer RNA	10,003	10,072	70 bp	+	–
ND4L	Protein-coding gene	10,073	10,369	297 bp	+	52.9%
ND4	Protein-coding gene	10,363	11,743	1,381 bp	+	47.5%
tRNA-His	Transfer RNA	11,744	11,812	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,813	11,879	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,880	11,951	72 bp	+	–
ND5	Protein-coding gene	11,952	13,787	1,836 bp	+	45.8%
ND6	Protein-coding gene	13,784	14,305	522 bp	−	44.6%
tRNA-Glu	Transfer RNA	14,306	14,374	69 bp	−	–
CYTB	Protein-coding gene	14,380	15,520	1,141 bp	+	45.8%
tRNA-Thr	Transfer RNA	15,521	15,592	72 bp	+	–
tRNA-Pro	Transfer RNA	15,592	15,661	70 bp	+	–