Dorosoma petenense

Threadfin shad

Maximum lifespan

4 yr

AnAge record

mtDNA size

16,792 bp

RefSeq NC_009580.1

GC content

45.30%

Whole genome

Non-coding

1,204 bp

D-loop 1,133 bp

Where Threadfin shad sits among 2,335 species

Whole-genome GC content against maximum lifespan. Threadfin shad has the 2,078th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,792 bp

GC skew (G − C) / (G + C): −0.244
AT skew (A − T) / (A + T): +0.056

Life history

Maximum lifespan: 4 years
Female sexual maturity: 2 years
Male sexual maturity: 2 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03840)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,792 bp

Protein-coding11,403 bp

12S rRNA951 bp

16S rRNA1,682 bp

All tRNA1,553 bp

D-loop1,133 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Dorosoma petenense genes

ND1NADH dehydrogenase subunit 1	975 bp	24.8%	28.3%	15.7%	31.2%	46.87%	−0.330	−0.066
ND2NADH dehydrogenase subunit 2	1,045 bp	28.3%	25.6%	13.6%	32.5%	46.12%	−0.411	+0.052
COX1Cytochrome c oxidase subunit I	1,551 bp	24.9%	28.6%	19.3%	27.2%	46.49%	−0.171	−0.070
COX2Cytochrome c oxidase subunit II	691 bp	28.8%	26.8%	16.9%	27.5%	44.43%	−0.238	+0.036
ATP8ATP synthase F0 subunit 8	168 bp	30.4%	28.0%	13.1%	28.6%	41.67%	−0.371	+0.041
ATP6ATP synthase F0 subunit 6	683 bp	25.5%	28.7%	14.2%	31.6%	45.83%	−0.380	−0.059
COX3Cytochrome c oxidase subunit III	785 bp	24.1%	27.5%	17.8%	30.6%	48.41%	−0.263	−0.067
ND3NADH dehydrogenase subunit 3	349 bp	24.6%	31.8%	15.2%	28.4%	43.55%	−0.303	−0.127
ND4LNADH dehydrogenase subunit 4L	297 bp	24.9%	24.9%	17.5%	32.7%	50.17%	−0.302	0.000
ND4NADH dehydrogenase subunit 4	1,381 bp	28.4%	27.7%	15.8%	28.2%	43.95%	−0.282	+0.013
ND5NADH dehydrogenase subunit 5	1,836 bp	29.2%	26.3%	14.0%	30.5%	44.50%	−0.371	+0.052
ND6NADH dehydrogenase subunit 6	522 bp	40.4%	15.9%	13.2%	30.5%	43.68%	−0.395	+0.435
CYTBCytochrome b	1,141 bp	26.7%	29.0%	16.3%	28.0%	44.26%	−0.263	−0.041
12S rRNA12S ribosomal RNA	951 bp	30.0%	19.9%	22.7%	27.4%	50.16%	−0.094	+0.203
16S rRNA16S ribosomal RNA	1,682 bp	33.4%	19.3%	21.2%	26.1%	47.33%	−0.103	+0.269
D-loopControl region (D-loop)	1,133 bp	35.0%	31.9%	13.9%	19.2%	33.19%	−0.160	+0.046

Codon usage

Counts per codon, darker is more frequent

Gene

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU125

UUC114

Leu L16.2%

UUA108

UUG23

CUU147

CUC104

CUA185

CUG50

Ile I7.2%

AUU163

AUC112

Met M4.2%

AUA88

AUG73

Val V6.3%

GUU55

GUC54

GUA106

GUG24

Ser S6.3%

UCU42

UCC72

UCA66

UCG6

AGU9

AGC45

Pro P5.7%

CCU46

CCC86

CCA68

CCG16

Thr T8.4%

ACU57

ACC139

ACA108

ACG14

Ala A9.2%

GCU46

GCC168

GCA121

GCG14

Tyr Y2.9%

UAU45

UAC66

His H2.7%

CAU36

CAC66

Gln Q2.5%

CAA83

CAG12

Asn N2.8%

AAU38

AAC69

Lys K2.0%

AAA69

AAG7

Asp D2.1%

GAU16

GAC64

Glu E2.7%

GAA74

GAG28

Cys C0.8%

UGU10

UGC20

Trp W3.1%

UGA97

UGG21

Arg R2.0%

CGU6

CGC8

CGA51

CGG13

Gly G6.5%

GGU23

GGC60

GGA111

GGG52

Stop 0.2%

UAA6

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_009580.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Dorosoma petenense (NC_009580.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	68	1,018	951 bp	+	50.2%
tRNA-Val	Transfer RNA	1,019	1,090	72 bp	+	–
16S rRNA	Ribosomal RNA	1,091	2,772	1,682 bp	+	47.3%
tRNA-Leu (UUR)	Transfer RNA	2,773	2,848	76 bp	+	–
ND1	Protein-coding gene	2,849	3,823	975 bp	+	46.9%
tRNA-Ile	Transfer RNA	3,834	3,905	72 bp	+	–
tRNA-Gln	Transfer RNA	3,905	3,975	71 bp	−	–
tRNA-Met	Transfer RNA	3,975	4,043	69 bp	+	–
ND2	Protein-coding gene	4,044	5,088	1,045 bp	+	46.1%
tRNA-Trp	Transfer RNA	5,090	5,161	72 bp	+	–
tRNA-Ala	Transfer RNA	5,163	5,231	69 bp	−	–
tRNA-Asn	Transfer RNA	5,232	5,305	74 bp	−	–
tRNA-Cys	Transfer RNA	5,339	5,404	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,408	5,478	71 bp	−	–
COX1	Protein-coding gene	5,480	7,030	1,551 bp	+	46.5%
tRNA-Ser (UCN)	Transfer RNA	7,031	7,101	71 bp	−	–
tRNA-Asp	Transfer RNA	7,106	7,174	69 bp	+	–
COX2	Protein-coding gene	7,187	7,877	691 bp	+	44.4%
tRNA-Lys	Transfer RNA	7,878	7,951	74 bp	+	–
ATP8	Protein-coding gene	7,953	8,120	168 bp	+	41.7%
ATP6	Protein-coding gene	8,111	8,793	683 bp	+	45.8%
COX3	Protein-coding gene	8,794	9,578	785 bp	+	48.4%
tRNA-Gly	Transfer RNA	9,579	9,650	72 bp	+	–
ND3	Protein-coding gene	9,651	9,999	349 bp	+	43.6%
tRNA-Arg	Transfer RNA	10,000	10,069	70 bp	+	–
ND4L	Protein-coding gene	10,070	10,366	297 bp	+	50.2%
ND4	Protein-coding gene	10,360	11,740	1,381 bp	+	44.0%
tRNA-His	Transfer RNA	11,741	11,809	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,810	11,877	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,878	11,949	72 bp	+	–
ND5	Protein-coding gene	11,950	13,785	1,836 bp	+	44.5%
ND6	Protein-coding gene	13,782	14,303	522 bp	−	43.7%
tRNA-Glu	Transfer RNA	14,304	14,372	69 bp	−	–
CYTB	Protein-coding gene	14,378	15,518	1,141 bp	+	44.3%
tRNA-Thr	Transfer RNA	15,519	15,590	72 bp	+	–
tRNA-Pro	Transfer RNA	15,590	15,659	70 bp	−	–
D-loop	Control region	15,660	16,792	1,133 bp	–	33.2%