MitoAge

Echinops telfairi

Lesser hedgehog tenrec

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Maximum lifespan
19 yr
AnAge record
mtDNA size
16,549 bp
RefSeq NC_002631.2
GC content
37.00%
Whole genome
Non-coding
1,220 bp
D-loop 1,120 bp

Where Lesser hedgehog tenrec sits among 2,335 species

Whole-genome GC content against maximum lifespan. Lesser hedgehog tenrec has the 978th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Lesser hedgehog tenrec
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,549 bp
GC skew (G − C) / (G + C)
−0.284
AT skew (A − T) / (A + T)
+0.000

Life history

Maximum lifespan
19 years
Adult weight
180 g
Birth weight
7.7 g
Basal metabolic rate
0.75 W
Body temperature
34.7 °C
Female sexual maturity
365 days
Male sexual maturity
365 days
Gestation or incubation
55 days
Litter or clutch size
6
Litters per year
1
Postnatal growth rate
0.0301 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01888)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,549 bp
Protein-coding11,323 bp
12S rRNA957 bp
16S rRNA1,557 bp
All tRNA1,495 bp
D-loop1,120 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp28.1%33.8%12.9%25.2%38.12%−0.324−0.093
ND2NADH dehydrogenase subunit 21,042 bp32.5%34.0%9.8%23.7%33.49%−0.415−0.022
COX1Cytochrome c oxidase subunit I1,542 bp26.8%33.5%16.5%23.2%39.69%−0.167−0.110
COX2Cytochrome c oxidase subunit II684 bp32.5%31.6%13.5%22.5%35.97%−0.252+0.014
ATP8ATP synthase F0 subunit 8207 bp37.2%32.9%6.8%23.2%29.95%−0.548+0.062
ATP6ATP synthase F0 subunit 6681 bp29.8%34.7%10.0%25.6%35.54%−0.438−0.075
COX3Cytochrome c oxidase subunit III784 bp24.4%33.3%15.3%27.0%42.35%−0.277−0.155
ND3NADH dehydrogenase subunit 3346 bp30.1%35.0%11.8%23.1%34.97%−0.322−0.076
ND4LNADH dehydrogenase subunit 4L297 bp26.3%35.4%12.5%25.9%38.38%−0.351−0.148
ND4NADH dehydrogenase subunit 41,378 bp30.8%34.6%10.0%24.5%34.54%−0.420−0.058
ND5NADH dehydrogenase subunit 51,809 bp31.2%33.6%10.7%24.5%35.21%−0.391−0.036
ND6NADH dehydrogenase subunit 6513 bp40.7%22.2%7.4%29.6%37.04%−0.600+0.294
CYTBCytochrome b1,140 bp27.5%33.7%13.4%25.4%38.77%−0.308−0.100
12S rRNA12S ribosomal RNA957 bp36.4%24.5%16.9%22.3%39.19%−0.136+0.196
16S rRNA16S ribosomal RNA1,557 bp36.6%26.7%16.9%19.8%36.67%−0.079+0.156
D-loopControl region (D-loop)1,120 bp31.6%29.7%13.5%25.2%38.66%−0.303+0.031

Codon usage

Counts per codon, darker is more frequent

3,791 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU142
UUC98
Leu L16.5%
UUA184
UUG26
CUU130
CUC66
CUA186
CUG32
Ile I9.7%
AUU242
AUC124
Met M6.2%
AUA195
AUG40
Val V4.5%
GUU66
GUC29
GUA63
GUG14
Ser S8.2%
UCU74
UCC52
UCA113
UCG6
AGU28
AGC37
Pro P5.2%
CCU75
CCC56
CCA61
CCG5
Thr T7.1%
ACU88
ACC76
ACA97
ACG10
Ala A6.5%
GCU85
GCC75
GCA80
GCG5
Tyr Y3.7%
UAU81
UAC58
His H2.4%
CAU53
CAC37
Gln Q2.0%
CAA71
CAG4
Asn N4.2%
AAU84
AAC77
Lys K2.4%
AAA81
AAG11
Asp D1.8%
GAU29
GAC38
Glu E2.5%
GAA71
GAG23
Cys C0.6%
UGU14
UGC10
Trp W2.7%
UGA84
UGG17
Arg R1.8%
CGU18
CGC11
CGA35
CGG5
Gly G5.6%
GGU60
GGC51
GGA69
GGG31
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_002631.2

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16565 bp+–
12S rRNARibosomal RNA661,022957 bp+39.2%
tRNA-ValTransfer RNA1,0231,08866 bp+–
16S rRNARibosomal RNA1,0892,6451,557 bp+36.7%
tRNA-Leu (UUR)Transfer RNA2,6462,71974 bp+–
ND1Protein-coding gene2,7203,674955 bp+38.1%
tRNA-IleTransfer RNA3,6753,74369 bp+–
tRNA-GlnTransfer RNA3,7413,81171 bp−–
tRNA-MetTransfer RNA3,8113,87868 bp+–
ND2Protein-coding gene3,8794,9201,042 bp+33.5%
tRNA-TrpTransfer RNA4,9214,98969 bp+–
tRNA-AlaTransfer RNA4,9915,06171 bp−–
tRNA-AsnTransfer RNA5,0615,13474 bp−–
tRNA-CysTransfer RNA5,1715,23767 bp−–
tRNA-TyrTransfer RNA5,2385,30871 bp−–
COX1Protein-coding gene5,3446,8851,542 bp+39.7%
tRNA-Ser (UCN)Transfer RNA6,8866,95570 bp−–
tRNA-AspTransfer RNA6,9587,02568 bp+–
COX2Protein-coding gene7,0267,709684 bp+36.0%
tRNA-LysTransfer RNA7,7127,77766 bp+–
ATP8Protein-coding gene7,7797,985207 bp+30.0%
ATP6Protein-coding gene7,9438,623681 bp+35.5%
COX3Protein-coding gene8,6239,406784 bp+42.4%
tRNA-GlyTransfer RNA9,4089,47467 bp+–
ND3Protein-coding gene9,4759,820346 bp+35.0%
tRNA-ArgTransfer RNA9,8219,88868 bp+–
ND4LProtein-coding gene9,88910,185297 bp+38.4%
ND4Protein-coding gene10,17911,5561,378 bp+34.5%
tRNA-HisTransfer RNA11,55711,62468 bp+–
tRNA-Ser (AGY)Transfer RNA11,62511,68258 bp+–
tRNA-Leu (CUN)Transfer RNA11,68211,75170 bp+–
ND5Protein-coding gene11,75213,5601,809 bp+35.2%
ND6Protein-coding gene13,55714,069513 bp−37.0%
tRNA-GluTransfer RNA14,06714,13569 bp−–
CYTBProtein-coding gene14,14115,2801,140 bp+38.8%
tRNA-ThrTransfer RNA15,28815,35265 bp+–
tRNA-ProTransfer RNA15,36315,42967 bp−–
D-loopControl region15,43016,5491,120 bp–38.7%

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