Elagatis bipinnulata
Rainbow runner
GC content
46.26%
Whole genome
Non-coding
922 bp
D-loop 855 bp
Where Rainbow runner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rainbow runner has the 1,925th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,542 bp
- GC skew (G − C) / (G + C)
- −0.275
- AT skew (A − T) / (A + T)
- +0.039
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,542 bp
Protein-coding11,411 bp
12S rRNA948 bp
16S rRNA1,716 bp
All tRNA1,545 bp
D-loop855 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.95% | −0.339 | −0.051 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 49.28% | −0.469 | +0.051 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.87% | −0.199 | −0.090 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.56% | −0.262 | +0.041 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.459 | +0.128 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.91% | −0.420 | +0.005 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 48.47% | −0.260 | −0.042 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 49.29% | −0.329 | −0.202 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.392 | −0.208 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.78% | −0.350 | −0.042 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.46% | −0.380 | +0.043 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.17% | −0.369 | +0.438 | |||||
| CYTBCytochrome b | 1,141 bp | 47.50% | −0.373 | −0.085 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 48.00% | −0.095 | +0.201 | |||||
| 16S rRNA16S ribosomal RNA | 1,716 bp | 46.39% | −0.103 | +0.193 | |||||
| D-loopControl region (D-loop) | 855 bp | 37.78% | −0.183 | +0.015 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU79
UUC159
Leu L17.3%
UUA83
UUG14
CUU149
CUC168
CUA181
CUG65
Ile I7.2%
AUU123
AUC152
Met M3.9%
AUA78
AUG72
Val V5.9%
GUU66
GUC75
GUA61
GUG22
Ser S6.1%
UCU52
UCC66
UCA60
UCG5
AGU12
AGC36
Pro P5.8%
CCU60
CCC87
CCA61
CCG13
Thr T7.7%
ACU59
ACC104
ACA118
ACG12
Ala A9.1%
GCU65
GCC150
GCA115
GCG18
Tyr Y2.9%
UAU43
UAC67
His H2.8%
CAU35
CAC73
Gln Q2.5%
CAA81
CAG16
Asn N3.3%
AAU37
AAC88
Lys K2.0%
AAA67
AAG9
Asp D2.1%
GAU27
GAC52
Glu E2.6%
GAA76
GAG24
Cys C0.6%
UGU2
UGC22
Trp W3.2%
UGA102
UGG19
Arg R2.0%
CGU8
CGC13
CGA49
CGG8
Gly G6.4%
GGU38
GGC77
GGA87
GGG40
Stop 0.3%
UAA7
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_029880.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,804 | 1,716 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,805 | 2,879 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,880 | 3,854 | 975 bp | + | 46.0% |
| tRNA-Ile | Transfer RNA | 3,859 | 3,928 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,928 | 3,998 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,998 | 4,066 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,067 | 5,113 | 1,047 bp | + | 49.3% |
| tRNA-Trp | Transfer RNA | 5,114 | 5,183 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,185 | 5,253 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,255 | 5,327 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,367 | 5,433 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,434 | 5,503 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,505 | 7,055 | 1,551 bp | + | 46.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,056 | 7,126 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,130 | 7,200 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,209 | 7,899 | 691 bp | + | 43.6% |
| tRNA-Lys | Transfer RNA | 7,900 | 7,974 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,976 | 8,143 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,134 | 8,817 | 684 bp | + | 45.9% |
| COX3 | Protein-coding gene | 8,817 | 9,602 | 786 bp | + | 48.5% |
| tRNA-Gly | Transfer RNA | 9,603 | 9,672 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,673 | 10,023 | 351 bp | + | 49.3% |
| tRNA-Arg | Transfer RNA | 10,024 | 10,090 | 67 bp | + | – |
| ND4L | Protein-coding gene | 10,091 | 10,387 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,381 | 11,761 | 1,381 bp | + | 46.8% |
| tRNA-His | Transfer RNA | 11,762 | 11,830 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,831 | 11,897 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,902 | 11,974 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,975 | 13,813 | 1,839 bp | + | 45.5% |
| ND6 | Protein-coding gene | 13,810 | 14,331 | 522 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 14,333 | 14,400 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,405 | 15,545 | 1,141 bp | + | 47.5% |
| tRNA-Thr | Transfer RNA | 15,546 | 15,617 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,617 | 15,687 | 71 bp | − | – |
| D-loop | Control region | 15,688 | 16,542 | 855 bp | – | 37.8% |