Elassoma zonatum

Banded pygmy sunfish

Maximum lifespan

3 yr

AnAge record

mtDNA size

16,071 bp

RefSeq NC_011388.1

GC content

42.26%

Whole genome

Non-coding

539 bp

D-loop 472 bp

Where Banded pygmy sunfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Banded pygmy sunfish has the 2,185th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,071 bp

GC skew (G − C) / (G + C): −0.216
AT skew (A − T) / (A + T): +0.007

Life history

Maximum lifespan: 3 years

Lifespan from AnAge · AnAge record

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,071 bp

Protein-coding11,406 bp

12S rRNA946 bp

16S rRNA1,656 bp

All tRNA1,525 bp

D-loop472 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Elassoma zonatum genes

ND1NADH dehydrogenase subunit 1	975 bp	26.3%	32.2%	15.7%	25.8%	41.54%	−0.244	−0.102
ND2NADH dehydrogenase subunit 2	1,045 bp	28.5%	28.7%	13.8%	29.0%	42.78%	−0.356	−0.003
COX1Cytochrome c oxidase subunit I	1,551 bp	24.4%	32.7%	18.2%	24.7%	42.94%	−0.150	−0.146
COX2Cytochrome c oxidase subunit II	691 bp	29.5%	28.5%	16.4%	25.6%	41.97%	−0.221	+0.017
ATP8ATP synthase F0 subunit 8	168 bp	29.2%	28.6%	11.9%	30.4%	42.26%	−0.437	+0.010
ATP6ATP synthase F0 subunit 6	684 bp	27.6%	31.7%	12.9%	27.8%	40.64%	−0.367	−0.069
COX3Cytochrome c oxidase subunit III	785 bp	24.5%	32.4%	16.9%	26.2%	43.19%	−0.215	−0.139
ND3NADH dehydrogenase subunit 3	349 bp	23.5%	34.4%	15.2%	26.9%	42.12%	−0.279	−0.188
ND4LNADH dehydrogenase subunit 4L	297 bp	21.2%	32.7%	15.8%	30.3%	46.13%	−0.314	−0.213
ND4NADH dehydrogenase subunit 4	1,381 bp	27.7%	30.2%	15.2%	26.9%	42.07%	−0.277	−0.043
ND5NADH dehydrogenase subunit 5	1,839 bp	28.7%	30.1%	15.2%	26.0%	41.22%	−0.261	−0.023
ND6NADH dehydrogenase subunit 6	522 bp	39.8%	16.1%	15.3%	28.7%	44.06%	−0.304	+0.425
CYTBCytochrome b	1,141 bp	26.4%	30.4%	15.4%	27.8%	43.21%	−0.286	−0.071
12S rRNA12S ribosomal RNA	946 bp	32.1%	22.0%	21.8%	24.1%	45.88%	−0.051	+0.188
16S rRNA16S ribosomal RNA	1,656 bp	34.4%	22.6%	19.9%	23.1%	43.00%	−0.076	+0.208
D-loopControl region (D-loop)	472 bp	37.1%	34.1%	10.8%	18.0%	28.81%	−0.250	+0.042

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU152

UUC88

Leu L17.0%

UUA177

UUG37

CUU147

CUC63

CUA171

CUG53

Ile I7.2%

AUU175

AUC98

Met M4.2%

AUA114

AUG47

Val V5.9%

GUU63

GUC43

GUA88

GUG31

Ser S6.6%

UCU59

UCC45

UCA78

UCG12

AGU19

AGC40

Pro P5.7%

CCU70

CCC83

CCA53

CCG11

Thr T8.1%

ACU88

ACC89

ACA116

ACG14

Ala A8.9%

GCU93

GCC118

GCA118

GCG8

Tyr Y3.0%

UAU56

UAC60

His H2.8%

CAU41

CAC64

Gln Q2.3%

CAA67

CAG22

Asn N3.4%

AAU50

AAC78

Lys K2.0%

AAA53

AAG23

Asp D2.0%

GAU33

GAC42

Glu E2.6%

GAA71

GAG27

Cys C0.7%

UGU6

UGC22

Trp W3.2%

UGA98

UGG22

Arg R2.0%

CGU15

CGC14

CGA40

CGG7

Gly G6.0%

GGU41

GGC69

GGA58

GGG60

Stop 0.2%

UAA6

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_011388.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Elassoma zonatum (NC_011388.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,014	946 bp	+	45.9%
tRNA-Val	Transfer RNA	1,015	1,086	72 bp	+	–
16S rRNA	Ribosomal RNA	1,086	2,741	1,656 bp	+	43.0%
tRNA-Leu (UUR)	Transfer RNA	2,743	2,816	74 bp	+	–
ND1	Protein-coding gene	2,817	3,791	975 bp	+	41.5%
tRNA-Ile	Transfer RNA	3,795	3,864	70 bp	+	–
tRNA-Gln	Transfer RNA	3,864	3,934	71 bp	−	–
tRNA-Met	Transfer RNA	3,934	4,002	69 bp	+	–
ND2	Protein-coding gene	4,003	5,047	1,045 bp	+	42.8%
tRNA-Trp	Transfer RNA	5,048	5,116	69 bp	+	–
tRNA-Ala	Transfer RNA	5,117	5,185	69 bp	−	–
tRNA-Asn	Transfer RNA	5,187	5,259	73 bp	−	–
tRNA-Cys	Transfer RNA	5,294	5,358	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,359	5,425	67 bp	−	–
COX1	Protein-coding gene	5,427	6,977	1,551 bp	+	42.9%
tRNA-Ser (UCN)	Transfer RNA	6,978	7,048	71 bp	−	–
tRNA-Asp	Transfer RNA	7,052	7,118	67 bp	+	–
COX2	Protein-coding gene	7,123	7,813	691 bp	+	42.0%
tRNA-Lys	Transfer RNA	7,814	7,887	74 bp	+	–
ATP8	Protein-coding gene	7,889	8,056	168 bp	+	42.3%
ATP6	Protein-coding gene	8,047	8,730	684 bp	+	40.6%
COX3	Protein-coding gene	8,736	9,520	785 bp	+	43.2%
tRNA-Gly	Transfer RNA	9,528	9,590	63 bp	+	–
ND3	Protein-coding gene	9,591	9,939	349 bp	+	42.1%
tRNA-Arg	Transfer RNA	9,940	10,008	69 bp	+	–
ND4L	Protein-coding gene	10,009	10,305	297 bp	+	46.1%
ND4	Protein-coding gene	10,299	11,679	1,381 bp	+	42.1%
tRNA-His	Transfer RNA	11,680	11,748	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,749	11,813	65 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,818	11,890	73 bp	+	–
ND5	Protein-coding gene	11,891	13,729	1,839 bp	+	41.2%
ND6	Protein-coding gene	13,725	14,246	522 bp	−	44.1%
tRNA-Glu	Transfer RNA	14,247	14,315	69 bp	−	–
CYTB	Protein-coding gene	14,319	15,459	1,141 bp	+	43.2%
tRNA-Thr	Transfer RNA	15,460	15,531	72 bp	+	–
tRNA-Pro	Transfer RNA	15,531	15,599	69 bp	−	–
D-loop	Control region	15,600	16,071	472 bp	–	28.8%