Engraulis japonicus

Japanese anchovy

Maximum lifespan

3 yr

AnAge record

mtDNA size

16,675 bp

RefSeq NC_003097.1

GC content

45.91%

Whole genome

Non-coding

1,083 bp

D-loop 1,024 bp

Where Japanese anchovy sits among 2,335 species

Whole-genome GC content against maximum lifespan. Japanese anchovy has the 2,178th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,675 bp

GC skew (G − C) / (G + C): −0.197
AT skew (A − T) / (A + T): +0.007

Life history

Maximum lifespan: 3 years
Female sexual maturity: 365 days
Male sexual maturity: 365 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03856)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,675 bp

Protein-coding11,400 bp

12S rRNA950 bp

16S rRNA1,697 bp

All tRNA1,547 bp

D-loop1,024 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Engraulis japonicus genes

ND1NADH dehydrogenase subunit 1	975 bp	24.1%	28.8%	18.1%	29.0%	47.08%	−0.233	−0.089
ND2NADH dehydrogenase subunit 2	1,047 bp	24.8%	27.0%	16.3%	31.8%	48.14%	−0.321	−0.042
COX1Cytochrome c oxidase subunit I	1,545 bp	25.4%	29.4%	19.2%	26.0%	45.18%	−0.152	−0.072
COX2Cytochrome c oxidase subunit II	691 bp	28.2%	28.4%	18.1%	25.3%	43.42%	−0.167	−0.003
ATP8ATP synthase F0 subunit 8	168 bp	29.8%	30.4%	13.1%	26.8%	39.88%	−0.343	−0.010
ATP6ATP synthase F0 subunit 6	684 bp	24.4%	31.6%	15.8%	28.2%	44.01%	−0.282	−0.128
COX3Cytochrome c oxidase subunit III	786 bp	23.7%	29.0%	19.3%	28.0%	47.33%	−0.183	−0.101
ND3NADH dehydrogenase subunit 3	349 bp	22.3%	30.1%	18.9%	28.7%	47.56%	−0.205	−0.148
ND4LNADH dehydrogenase subunit 4L	297 bp	25.9%	28.3%	18.2%	27.6%	45.79%	−0.206	−0.043
ND4NADH dehydrogenase subunit 4	1,381 bp	25.1%	28.1%	17.2%	29.5%	46.78%	−0.263	−0.056
ND5NADH dehydrogenase subunit 5	1,836 bp	26.1%	28.0%	17.1%	28.8%	45.92%	−0.255	−0.035
ND6NADH dehydrogenase subunit 6	522 bp	35.1%	16.5%	16.7%	31.8%	48.47%	−0.312	+0.361
CYTBCytochrome b	1,141 bp	24.6%	30.5%	17.4%	27.5%	44.87%	−0.227	−0.107
12S rRNA12S ribosomal RNA	950 bp	29.7%	20.2%	22.7%	27.4%	50.11%	−0.092	+0.190
16S rRNA16S ribosomal RNA	1,697 bp	33.4%	21.1%	21.0%	24.5%	45.49%	−0.078	+0.226
D-loopControl region (D-loop)	1,024 bp	29.4%	30.8%	16.3%	23.5%	39.84%	−0.181	−0.023

Codon usage

Counts per codon, darker is more frequent

Gene

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU94

UUC139

Leu L16.0%

UUA97

UUG35

CUU166

CUC98

CUA133

CUG80

Ile I7.2%

AUU165

AUC110

Met M4.2%

AUA48

AUG110

Val V6.5%

GUU68

GUC51

GUA92

GUG36

Ser S6.0%

UCU63

UCC42

UCA54

UCG17

AGU15

AGC36

Pro P5.6%

CCU82

CCC63

CCA53

CCG17

Thr T8.4%

ACU82

ACC111

ACA102

ACG26

Ala A9.6%

GCU84

GCC115

GCA134

GCG32

Tyr Y2.9%

UAU38

UAC71

His H2.7%

CAU24

CAC80

Gln Q2.6%

CAA76

CAG24

Asn N3.0%

AAU43

AAC73

Lys K2.0%

AAA46

AAG30

Asp D1.9%

GAU19

GAC54

Glu E2.7%

GAA65

GAG39

Cys C0.8%

UGU10

UGC20

Trp W3.1%

UGA103

UGG16

Arg R1.9%

CGU8

CGC9

CGA40

CGG16

Gly G6.4%

GGU36

GGC53

GGA97

GGG57

Stop 0.2%

UAA6

UAG3

AGA0

AGG0

Genome map

38 annotated features in NC_003097.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Engraulis japonicus (NC_003097.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,019	950 bp	+	50.1%
tRNA-Val	Transfer RNA	1,020	1,091	72 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,788	1,697 bp	+	45.5%
tRNA-Leu (UUR)	Transfer RNA	2,789	2,863	75 bp	+	–
ND1	Protein-coding gene	2,865	3,839	975 bp	+	47.1%
tRNA-Ile	Transfer RNA	3,841	3,912	72 bp	+	–
tRNA-Gln	Transfer RNA	3,912	3,982	71 bp	−	–
tRNA-Met	Transfer RNA	3,982	4,050	69 bp	+	–
ND2	Protein-coding gene	4,051	5,097	1,047 bp	+	48.1%
tRNA-Trp	Transfer RNA	5,097	5,166	70 bp	+	–
tRNA-Ala	Transfer RNA	5,169	5,237	69 bp	−	–
tRNA-Asn	Transfer RNA	5,239	5,311	73 bp	−	–
tRNA-Cys	Transfer RNA	5,343	5,408	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,409	5,479	71 bp	−	–
COX1	Protein-coding gene	5,481	7,025	1,545 bp	+	45.2%
tRNA-Ser (UCN)	Transfer RNA	7,026	7,096	71 bp	−	–
tRNA-Asp	Transfer RNA	7,102	7,169	68 bp	+	–
COX2	Protein-coding gene	7,180	7,870	691 bp	+	43.4%
tRNA-Lys	Transfer RNA	7,871	7,943	73 bp	+	–
ATP8	Protein-coding gene	7,945	8,112	168 bp	+	39.9%
ATP6	Protein-coding gene	8,103	8,786	684 bp	+	44.0%
COX3	Protein-coding gene	8,786	9,571	786 bp	+	47.3%
tRNA-Gly	Transfer RNA	9,571	9,641	71 bp	+	–
ND3	Protein-coding gene	9,642	9,990	349 bp	+	47.6%
tRNA-Arg	Transfer RNA	9,991	10,059	69 bp	+	–
ND4L	Protein-coding gene	10,060	10,356	297 bp	+	45.8%
ND4	Protein-coding gene	10,350	11,730	1,381 bp	+	46.8%
tRNA-His	Transfer RNA	11,731	11,799	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,801	11,867	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,868	11,939	72 bp	+	–
ND5	Protein-coding gene	11,940	13,775	1,836 bp	+	45.9%
ND6	Protein-coding gene	13,772	14,293	522 bp	−	48.5%
tRNA-Glu	Transfer RNA	14,294	14,362	69 bp	−	–
CYTB	Protein-coding gene	14,368	15,508	1,141 bp	+	44.9%
tRNA-Thr	Transfer RNA	15,509	15,581	73 bp	+	–
tRNA-Pro	Transfer RNA	15,581	15,651	71 bp	−	–
D-loop	Control region	15,652	16,675	1,024 bp	–	39.8%