Epinephelus areolatus

Areolate grouper

Maximum lifespan

15 yr

AnAge record

mtDNA size

16,893 bp

RefSeq NC_020785.1

GC content

44.39%

Whole genome

Non-coding

1,268 bp

D-loop 1,191 bp

Where Areolate grouper sits among 2,335 species

Whole-genome GC content against maximum lifespan. Areolate grouper has the 1,212th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,893 bp

GC skew (G − C) / (G + C): −0.264
AT skew (A − T) / (A + T): +0.028

Life history

Maximum lifespan: 15 years
Adult weight: 770 g

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04367)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,893 bp

Protein-coding11,407 bp

12S rRNA953 bp

16S rRNA1,706 bp

All tRNA1,559 bp

D-loop1,191 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Epinephelus areolatus genes

ND1NADH dehydrogenase subunit 1	975 bp	25.3%	27.4%	14.7%	32.6%	47.28%	−0.380	−0.039
ND2NADH dehydrogenase subunit 2	1,045 bp	28.6%	23.8%	12.1%	35.5%	47.56%	−0.493	+0.091
COX1Cytochrome c oxidase subunit I	1,551 bp	25.0%	30.9%	18.4%	25.7%	44.10%	−0.167	−0.105
COX2Cytochrome c oxidase subunit II	691 bp	27.9%	28.2%	16.6%	27.2%	43.85%	−0.241	−0.005
ATP8ATP synthase F0 subunit 8	168 bp	30.4%	23.8%	10.7%	35.1%	45.83%	−0.532	+0.121
ATP6ATP synthase F0 subunit 6	684 bp	27.2%	29.5%	13.2%	30.1%	43.28%	−0.392	−0.041
COX3Cytochrome c oxidase subunit III	785 bp	25.4%	28.3%	16.3%	30.1%	46.37%	−0.297	−0.055
ND3NADH dehydrogenase subunit 3	349 bp	20.9%	30.7%	16.3%	32.1%	48.42%	−0.325	−0.189
ND4LNADH dehydrogenase subunit 4L	297 bp	23.2%	30.3%	14.8%	31.6%	46.47%	−0.362	−0.132
ND4NADH dehydrogenase subunit 4	1,381 bp	27.7%	28.7%	13.7%	29.9%	43.59%	−0.372	−0.019
ND5NADH dehydrogenase subunit 5	1,839 bp	27.6%	28.3%	13.9%	30.2%	44.10%	−0.371	−0.012
ND6NADH dehydrogenase subunit 6	522 bp	37.4%	13.8%	16.3%	32.6%	48.85%	−0.333	+0.461
CYTBCytochrome b	1,142 bp	24.5%	29.1%	15.2%	31.2%	46.41%	−0.343	−0.085
12S rRNA12S ribosomal RNA	953 bp	29.4%	22.4%	22.1%	26.1%	48.27%	−0.083	+0.136
16S rRNA16S ribosomal RNA	1,706 bp	33.7%	21.2%	20.2%	24.9%	45.08%	−0.103	+0.227
D-loopControl region (D-loop)	1,191 bp	34.8%	34.5%	14.5%	16.1%	30.65%	−0.052	+0.005

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%

UUU104

UUC140

Leu L17.5%

UUA99

UUG22

CUU143

CUC154

CUA191

CUG56

Ile I6.9%

AUU159

AUC102

Met M3.9%

AUA103

AUG47

Val V5.8%

GUU82

GUC38

GUA74

GUG27

Ser S6.4%

UCU55

UCC68

UCA56

UCG11

AGU10

AGC45

Pro P5.7%

CCU57

CCC94

CCA62

CCG4

Thr T7.9%

ACU50

ACC116

ACA123

ACG12

Ala A9.1%

GCU59

GCC155

GCA121

GCG11

Tyr Y2.9%

UAU47

UAC64

His H2.8%

CAU27

CAC79

Gln Q2.4%

CAA82

CAG11

Asn N3.1%

AAU36

AAC82

Lys K2.0%

AAA69

AAG9

Asp D2.1%

GAU30

GAC49

Glu E2.5%

GAA79

GAG18

Cys C0.8%

UGU12

UGC19

Trp W3.1%

UGA106

UGG12

Arg R2.1%

CGU13

CGC16

CGA41

CGG10

Gly G6.3%

GGU42

GGC78

GGA81

GGG38

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_020785.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (44.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Epinephelus areolatus (NC_020785.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	70	70 bp	+	–
12S rRNA	Ribosomal RNA	71	1,023	953 bp	+	48.3%
tRNA-Val	Transfer RNA	1,024	1,093	70 bp	+	–
16S rRNA	Ribosomal RNA	1,094	2,799	1,706 bp	+	45.1%
tRNA-Leu (UUR)	Transfer RNA	2,800	2,874	75 bp	+	–
ND1	Protein-coding gene	2,875	3,849	975 bp	+	47.3%
tRNA-Ile	Transfer RNA	3,854	3,923	70 bp	+	–
tRNA-Gln	Transfer RNA	3,923	3,993	71 bp	−	–
tRNA-Met	Transfer RNA	3,994	4,062	69 bp	+	–
ND2	Protein-coding gene	4,063	5,107	1,045 bp	+	47.6%
tRNA-Trp	Transfer RNA	5,108	5,178	71 bp	+	–
tRNA-Ala	Transfer RNA	5,180	5,248	69 bp	−	–
tRNA-Asn	Transfer RNA	5,249	5,321	73 bp	−	–
tRNA-Cys	Transfer RNA	5,365	5,431	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,432	5,502	71 bp	−	–
COX1	Protein-coding gene	5,504	7,054	1,551 bp	+	44.1%
tRNA-Ser (UCN)	Transfer RNA	7,056	7,126	71 bp	−	–
tRNA-Asp	Transfer RNA	7,130	7,203	74 bp	+	–
COX2	Protein-coding gene	7,212	7,902	691 bp	+	43.9%
tRNA-Lys	Transfer RNA	7,903	7,976	74 bp	+	–
ATP8	Protein-coding gene	7,978	8,145	168 bp	+	45.8%
ATP6	Protein-coding gene	8,136	8,819	684 bp	+	43.3%
COX3	Protein-coding gene	8,819	9,603	785 bp	+	46.4%
tRNA-Gly	Transfer RNA	9,604	9,675	72 bp	+	–
ND3	Protein-coding gene	9,676	10,024	349 bp	+	48.4%
tRNA-Arg	Transfer RNA	10,025	10,093	69 bp	+	–
ND4L	Protein-coding gene	10,094	10,390	297 bp	+	46.5%
ND4	Protein-coding gene	10,384	11,764	1,381 bp	+	43.6%
tRNA-His	Transfer RNA	11,765	11,834	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,835	11,904	70 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,913	11,985	73 bp	+	–
ND5	Protein-coding gene	11,986	13,824	1,839 bp	+	44.1%
ND6	Protein-coding gene	13,821	14,342	522 bp	−	48.9%
tRNA-Glu	Transfer RNA	14,343	14,411	69 bp	−	–
CYTB	Protein-coding gene	14,419	15,560	1,142 bp	+	46.4%
tRNA-Thr	Transfer RNA	15,561	15,633	73 bp	+	–
tRNA-Pro	Transfer RNA	15,633	15,702	70 bp	−	–
D-loop	Control region	15,703	16,893	1,191 bp	–	30.7%