MitoAge

Epinephelus coioides

Orange-spotted grouper

Add to compare Download FASTA
Maximum lifespan
22 yr
AnAge record
mtDNA size
16,418 bp
RefSeq NC_011111.1
GC content
44.76%
Whole genome
Non-coding
791 bp
D-loop 720 bp

Where Orange-spotted grouper sits among 2,335 species

Whole-genome GC content against maximum lifespan. Orange-spotted grouper has the 786th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Orange-spotted grouper
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,418 bp
GC skew (G − C) / (G + C)
−0.293
AT skew (A − T) / (A + T)
+0.039

Life history

Maximum lifespan
22 years
Adult weight
8.3 kg
Female sexual maturity
2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04369)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,418 bp
Protein-coding11,403 bp
12S rRNA954 bp
16S rRNA1,705 bp
All tRNA1,566 bp
D-loop720 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp26.9%27.2%13.6%32.3%45.95%−0.406−0.006
ND2NADH dehydrogenase subunit 21,045 bp30.4%25.6%10.8%33.1%43.92%−0.508+0.085
COX1Cytochrome c oxidase subunit I1,551 bp25.2%30.5%17.5%26.8%44.29%−0.208−0.095
COX2Cytochrome c oxidase subunit II691 bp29.2%26.8%15.8%28.2%43.99%−0.283+0.044
ATP8ATP synthase F0 subunit 8168 bp28.0%25.6%12.5%33.9%46.43%−0.462+0.044
ATP6ATP synthase F0 subunit 6684 bp27.0%29.4%12.7%30.8%43.57%−0.416−0.041
COX3Cytochrome c oxidase subunit III785 bp26.4%29.3%15.7%28.7%44.33%−0.293−0.053
ND3NADH dehydrogenase subunit 3349 bp22.1%33.0%14.3%30.7%44.99%−0.363−0.198
ND4LNADH dehydrogenase subunit 4L297 bp23.9%26.9%14.5%34.7%49.16%−0.411−0.060
ND4NADH dehydrogenase subunit 41,381 bp27.1%27.0%13.7%32.2%45.91%−0.404+0.001
ND5NADH dehydrogenase subunit 51,836 bp27.9%27.2%13.3%31.6%44.88%−0.408+0.014
ND6NADH dehydrogenase subunit 6522 bp37.9%16.1%14.4%31.6%45.98%−0.375+0.404
CYTBCytochrome b1,141 bp25.2%28.3%14.5%32.0%46.45%−0.377−0.057
12S rRNA12S ribosomal RNA954 bp30.3%21.6%21.3%26.8%48.11%−0.115+0.168
16S rRNA16S ribosomal RNA1,705 bp33.4%21.0%20.2%25.4%45.57%−0.115+0.228
D-loopControl region (D-loop)720 bp32.2%33.1%16.0%18.8%34.72%−0.080−0.013

Codon usage

Counts per codon, darker is more frequent

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU113
UUC127
Leu L17.3%
UUA113
UUG14
CUU141
CUC153
CUA203
CUG35
Ile I7.3%
AUU158
AUC119
Met M4.0%
AUA108
AUG46
Val V5.6%
GUU56
GUC56
GUA77
GUG23
Ser S6.4%
UCU44
UCC71
UCA64
UCG7
AGU10
AGC46
Pro P5.7%
CCU57
CCC100
CCA58
CCG3
Thr T8.2%
ACU51
ACC126
ACA132
ACG3
Ala A8.9%
GCU62
GCC146
GCA121
GCG9
Tyr Y2.9%
UAU45
UAC67
His H2.8%
CAU30
CAC76
Gln Q2.5%
CAA82
CAG13
Asn N3.0%
AAU33
AAC82
Lys K2.0%
AAA72
AAG5
Asp D2.0%
GAU16
GAC62
Glu E2.5%
GAA80
GAG17
Cys C0.8%
UGU13
UGC18
Trp W3.2%
UGA105
UGG15
Arg R2.1%
CGU14
CGC16
CGA43
CGG6
Gly G6.2%
GGU39
GGC90
GGA76
GGG32
Stop 0.2%
UAA6
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_011111.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,023954 bp+48.1%
tRNA-ValTransfer RNA1,0231,09270 bp+–
16S rRNARibosomal RNA1,0942,7981,705 bp+45.6%
tRNA-Leu (UUR)Transfer RNA2,7992,87476 bp+–
ND1Protein-coding gene2,8753,849975 bp+46.0%
tRNA-IleTransfer RNA3,8543,92370 bp+–
tRNA-GlnTransfer RNA3,9233,99371 bp−–
tRNA-MetTransfer RNA3,9944,06269 bp+–
ND2Protein-coding gene4,0635,1071,045 bp+43.9%
tRNA-TrpTransfer RNA5,1085,17871 bp+–
tRNA-AlaTransfer RNA5,1805,24869 bp−–
tRNA-AsnTransfer RNA5,2495,32173 bp−–
tRNA-CysTransfer RNA5,3615,42868 bp−–
tRNA-TyrTransfer RNA5,4295,49971 bp−–
COX1Protein-coding gene5,5017,0511,551 bp+44.3%
tRNA-Ser (UCN)Transfer RNA7,0537,12371 bp−–
tRNA-AspTransfer RNA7,1277,19973 bp+–
COX2Protein-coding gene7,2087,898691 bp+44.0%
tRNA-LysTransfer RNA7,8997,97274 bp+–
ATP8Protein-coding gene7,9748,141168 bp+46.4%
ATP6Protein-coding gene8,1328,815684 bp+43.6%
COX3Protein-coding gene8,8159,599785 bp+44.3%
tRNA-GlyTransfer RNA9,6009,67071 bp+–
ND3Protein-coding gene9,67110,019349 bp+45.0%
tRNA-ArgTransfer RNA10,02010,08869 bp+–
ND4LProtein-coding gene10,08910,385297 bp+49.2%
ND4Protein-coding gene10,37911,7591,381 bp+45.9%
tRNA-HisTransfer RNA11,76011,82970 bp+–
tRNA-Ser (AGY)Transfer RNA11,83011,90475 bp+–
tRNA-Leu (CUN)Transfer RNA11,91011,98273 bp+–
ND5Protein-coding gene11,98313,8181,836 bp+44.9%
ND6Protein-coding gene13,81514,336522 bp−46.0%
tRNA-GluTransfer RNA14,33714,40670 bp−–
CYTBProtein-coding gene14,41415,5541,141 bp+46.5%
tRNA-ThrTransfer RNA15,55515,62874 bp+–
tRNA-ProTransfer RNA15,62915,69870 bp+–
D-loopControl region15,69916,418720 bp–34.7%

Downloads