Epinephelus latifasciatus
Striped grouper
GC content
45.04%
Whole genome
Non-coding
759 bp
D-loop 684 bp
Where Striped grouper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Striped grouper has the 469th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,389 bp
- GC skew (G − C) / (G + C)
- −0.291
- AT skew (A − T) / (A + T)
- +0.041
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,389 bp
Protein-coding11,405 bp
12S rRNA953 bp
16S rRNA1,707 bp
All tRNA1,565 bp
D-loop684 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.69% | −0.389 | −0.035 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.12% | −0.515 | +0.105 | |||||
| COX1Cytochrome c oxidase subunit I | 1,550 bp | 45.29% | −0.185 | −0.108 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.13% | −0.275 | +0.048 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.494 | +0.056 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.54% | −0.395 | −0.059 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.61% | −0.291 | −0.054 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.85% | −0.400 | −0.164 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.377 | −0.068 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.34% | −0.384 | −0.001 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.54% | −0.404 | +0.008 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.421 | +0.435 | |||||
| CYTBCytochrome b | 1,141 bp | 45.40% | −0.367 | −0.075 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 48.79% | −0.118 | +0.172 | |||||
| 16S rRNA16S ribosomal RNA | 1,707 bp | 46.75% | −0.100 | +0.215 | |||||
| D-loopControl region (D-loop) | 684 bp | 30.99% | −0.226 | +0.047 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU112
UUC133
Leu L17.3%
UUA103
UUG20
CUU140
CUC155
CUA199
CUG40
Ile I7.3%
AUU158
AUC119
Met M4.1%
AUA111
AUG44
Val V5.7%
GUU73
GUC45
GUA79
GUG20
Ser S6.4%
UCU52
UCC65
UCA64
UCG5
AGU10
AGC49
Pro P5.8%
CCU56
CCC105
CCA52
CCG8
Thr T7.9%
ACU51
ACC117
ACA124
ACG8
Ala A8.9%
GCU54
GCC156
GCA117
GCG13
Tyr Y2.9%
UAU40
UAC71
His H2.8%
CAU24
CAC82
Gln Q2.5%
CAA83
CAG11
Asn N3.0%
AAU36
AAC80
Lys K2.0%
AAA70
AAG7
Asp D2.0%
GAU17
GAC60
Glu E2.6%
GAA80
GAG18
Cys C0.8%
UGU13
UGC17
Trp W3.1%
UGA102
UGG17
Arg R2.0%
CGU10
CGC18
CGA47
CGG3
Gly G6.2%
GGU35
GGC89
GGA70
GGG43
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_020784.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,023 | 953 bp | + | 48.8% |
| tRNA-Val | Transfer RNA | 1,024 | 1,093 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,800 | 1,707 bp | + | 46.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,801 | 2,876 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,877 | 3,851 | 975 bp | + | 47.7% |
| tRNA-Ile | Transfer RNA | 3,856 | 3,925 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,925 | 3,995 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,996 | 4,064 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,065 | 5,109 | 1,045 bp | + | 46.1% |
| tRNA-Trp | Transfer RNA | 5,110 | 5,180 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,182 | 5,250 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,251 | 5,323 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,363 | 5,430 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,431 | 5,501 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,503 | 7,052 | 1,550 bp | + | 45.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,057 | 7,127 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,131 | 7,203 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,212 | 7,902 | 691 bp | + | 43.1% |
| tRNA-Lys | Transfer RNA | 7,903 | 7,976 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,978 | 8,145 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,136 | 8,819 | 684 bp | + | 42.5% |
| COX3 | Protein-coding gene | 8,819 | 9,603 | 785 bp | + | 45.6% |
| tRNA-Gly | Transfer RNA | 9,604 | 9,675 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,676 | 10,024 | 349 bp | + | 45.9% |
| tRNA-Arg | Transfer RNA | 10,025 | 10,093 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,094 | 10,390 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,384 | 11,764 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,765 | 11,834 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,835 | 11,906 | 72 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,914 | 11,986 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,987 | 13,825 | 1,839 bp | + | 44.5% |
| ND6 | Protein-coding gene | 13,822 | 14,343 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,344 | 14,413 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,421 | 15,561 | 1,141 bp | + | 45.4% |
| tRNA-Thr | Transfer RNA | 15,562 | 15,635 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,636 | 15,705 | 70 bp | − | – |
| D-loop | Control region | 15,706 | 16,389 | 684 bp | – | 31.0% |