Epinephelus quoyans
Longfin grouper
GC content
43.49%
Whole genome
Non-coding
1,165 bp
D-loop 1,093 bp
Where Longfin grouper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Longfin grouper has the 1,310th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,797 bp
- GC skew (G − C) / (G + C)
- −0.270
- AT skew (A − T) / (A + T)
- +0.029
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,797 bp
Protein-coding11,407 bp
12S rRNA954 bp
16S rRNA1,708 bp
All tRNA1,563 bp
D-loop1,093 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.46% | −0.413 | −0.011 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 45.79% | −0.495 | +0.079 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.10% | −0.133 | −0.140 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.52% | −0.207 | −0.046 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.486 | +0.021 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.81% | −0.406 | −0.045 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.46% | −0.289 | −0.060 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.98% | −0.280 | −0.216 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.80% | −0.367 | −0.114 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.22% | −0.407 | +0.008 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.83% | −0.392 | +0.001 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.55% | −0.416 | +0.448 | |||||
| CYTBCytochrome b | 1,141 bp | 46.54% | −0.330 | −0.082 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 48.01% | −0.100 | +0.153 | |||||
| 16S rRNA16S ribosomal RNA | 1,708 bp | 45.38% | −0.089 | +0.220 | |||||
| D-loopControl region (D-loop) | 1,093 bp | 31.02% | −0.121 | +0.061 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU104
UUC141
Leu L17.3%
UUA117
UUG22
CUU153
CUC145
CUA182
CUG38
Ile I7.3%
AUU181
AUC96
Met M4.1%
AUA111
AUG45
Val V5.6%
GUU73
GUC41
GUA75
GUG23
Ser S6.4%
UCU46
UCC63
UCA68
UCG10
AGU12
AGC45
Pro P5.8%
CCU74
CCC78
CCA65
CCG2
Thr T8.1%
ACU59
ACC101
ACA141
ACG9
Ala A8.8%
GCU74
GCC141
GCA106
GCG15
Tyr Y2.9%
UAU47
UAC63
His H2.8%
CAU32
CAC75
Gln Q2.4%
CAA80
CAG13
Asn N3.1%
AAU41
AAC77
Lys K2.1%
AAA73
AAG6
Asp D2.0%
GAU31
GAC46
Glu E2.5%
GAA77
GAG19
Cys C0.8%
UGU13
UGC16
Trp W3.1%
UGA107
UGG11
Arg R2.1%
CGU13
CGC18
CGA41
CGG8
Gly G6.2%
GGU49
GGC69
GGA77
GGG42
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_021450.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 71 | 71 bp | + | – |
| 12S rRNA | Ribosomal RNA | 72 | 1,025 | 954 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,026 | 1,095 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,096 | 2,803 | 1,708 bp | + | 45.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,804 | 2,879 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,880 | 3,854 | 975 bp | + | 46.5% |
| tRNA-Ile | Transfer RNA | 3,859 | 3,928 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,928 | 3,998 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,999 | 4,067 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,068 | 5,113 | 1,046 bp | + | 45.8% |
| tRNA-Trp | Transfer RNA | 5,114 | 5,184 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,186 | 5,254 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,254 | 5,330 | 77 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,371 | 5,439 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,440 | 5,510 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,512 | 7,062 | 1,551 bp | + | 42.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,064 | 7,134 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,137 | 7,209 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,215 | 7,905 | 691 bp | + | 40.5% |
| tRNA-Lys | Transfer RNA | 7,906 | 7,979 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,981 | 8,148 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,139 | 8,822 | 684 bp | + | 41.8% |
| COX3 | Protein-coding gene | 8,822 | 9,606 | 785 bp | + | 44.5% |
| tRNA-Gly | Transfer RNA | 9,607 | 9,678 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,679 | 10,027 | 349 bp | + | 43.0% |
| tRNA-Arg | Transfer RNA | 10,028 | 10,096 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,097 | 10,393 | 297 bp | + | 46.8% |
| ND4 | Protein-coding gene | 10,387 | 11,767 | 1,381 bp | + | 42.2% |
| tRNA-His | Transfer RNA | 11,768 | 11,836 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,838 | 11,906 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,916 | 11,988 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,989 | 13,827 | 1,839 bp | + | 43.8% |
| ND6 | Protein-coding gene | 13,824 | 14,345 | 522 bp | − | 46.6% |
| tRNA-Glu | Transfer RNA | 14,346 | 14,414 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,422 | 15,562 | 1,141 bp | + | 46.5% |
| tRNA-Thr | Transfer RNA | 15,563 | 15,635 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,635 | 15,704 | 70 bp | − | – |
| D-loop | Control region | 15,705 | 16,797 | 1,093 bp | – | 31.0% |