Epinephelus tukula
Potato grouper
GC content
45.26%
Whole genome
Non-coding
875 bp
D-loop 805 bp
Where Potato grouper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Potato grouper has the 600th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,503 bp
- GC skew (G − C) / (G + C)
- −0.281
- AT skew (A − T) / (A + T)
- +0.037
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,503 bp
Protein-coding11,406 bp
12S rRNA952 bp
16S rRNA1,705 bp
All tRNA1,566 bp
D-loop805 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.49% | −0.382 | −0.016 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 45.17% | −0.470 | +0.075 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.46% | −0.191 | −0.116 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.99% | −0.270 | +0.039 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.526 | +0.065 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.32% | −0.387 | −0.043 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.62% | −0.301 | −0.041 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.71% | −0.376 | −0.196 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.371 | −0.091 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.85% | −0.400 | +0.005 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.92% | −0.409 | +0.027 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.36% | −0.388 | +0.414 | |||||
| CYTBCytochrome b | 1,141 bp | 47.33% | −0.352 | −0.082 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 50.00% | −0.118 | +0.189 | |||||
| 16S rRNA16S ribosomal RNA | 1,705 bp | 45.92% | −0.096 | +0.219 | |||||
| D-loopControl region (D-loop) | 805 bp | 29.94% | −0.012 | −0.043 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU100
UUC135
Leu L17.3%
UUA98
UUG24
CUU138
CUC158
CUA202
CUG40
Ile I7.1%
AUU142
AUC128
Met M4.0%
AUA105
AUG47
Val V5.9%
GUU70
GUC51
GUA77
GUG25
Ser S6.4%
UCU42
UCC73
UCA60
UCG10
AGU11
AGC46
Pro P5.8%
CCU53
CCC107
CCA57
CCG4
Thr T8.1%
ACU47
ACC124
ACA128
ACG9
Ala A9.0%
GCU64
GCC150
GCA116
GCG12
Tyr Y2.9%
UAU40
UAC72
His H2.8%
CAU35
CAC71
Gln Q2.5%
CAA83
CAG11
Asn N3.0%
AAU30
AAC84
Lys K2.0%
AAA68
AAG9
Asp D2.0%
GAU22
GAC56
Glu E2.5%
GAA75
GAG22
Cys C0.8%
UGU14
UGC17
Trp W3.1%
UGA103
UGG16
Arg R2.1%
CGU11
CGC19
CGA43
CGG7
Gly G6.3%
GGU35
GGC94
GGA69
GGG41
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_024039.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,021 | 952 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,021 | 1,090 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,796 | 1,705 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,797 | 2,872 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,873 | 3,847 | 975 bp | + | 47.5% |
| tRNA-Ile | Transfer RNA | 3,852 | 3,921 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,921 | 3,991 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,992 | 4,060 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,061 | 5,105 | 1,045 bp | + | 45.2% |
| tRNA-Trp | Transfer RNA | 5,106 | 5,176 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,178 | 5,246 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,247 | 5,319 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,359 | 5,426 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,427 | 5,497 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,499 | 7,049 | 1,551 bp | + | 45.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,051 | 7,121 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,125 | 7,197 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,206 | 7,896 | 691 bp | + | 44.0% |
| tRNA-Lys | Transfer RNA | 7,897 | 7,970 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,972 | 8,139 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,130 | 8,813 | 684 bp | + | 45.3% |
| COX3 | Protein-coding gene | 8,813 | 9,597 | 785 bp | + | 46.6% |
| tRNA-Gly | Transfer RNA | 9,598 | 9,668 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,669 | 10,017 | 349 bp | + | 48.7% |
| tRNA-Arg | Transfer RNA | 10,018 | 10,086 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,087 | 10,383 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,377 | 11,757 | 1,381 bp | + | 46.9% |
| tRNA-His | Transfer RNA | 11,758 | 11,827 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,828 | 11,902 | 75 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,907 | 11,979 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,980 | 13,818 | 1,839 bp | + | 44.9% |
| ND6 | Protein-coding gene | 13,815 | 14,336 | 522 bp | − | 46.4% |
| tRNA-Glu | Transfer RNA | 14,337 | 14,406 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,414 | 15,554 | 1,141 bp | + | 47.3% |
| tRNA-Thr | Transfer RNA | 15,555 | 15,628 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,629 | 15,698 | 70 bp | + | – |
| D-loop | Control region | 15,699 | 16,503 | 805 bp | – | 29.9% |