Erimyzon oblongus
Creek chubsucker
GC content
43.06%
Whole genome
Non-coding
1,034 bp
D-loop 964 bp
Where Creek chubsucker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Creek chubsucker has the 1,900th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,627 bp
- GC skew (G − C) / (G + C)
- −0.191
- AT skew (A − T) / (A + T)
- +0.031
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,627 bp
Protein-coding11,407 bp
12S rRNA949 bp
16S rRNA1,677 bp
All tRNA1,560 bp
D-loop964 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.36% | −0.230 | −0.021 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.41% | −0.320 | −0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.75% | −0.155 | −0.088 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.96% | −0.194 | +0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 36.31% | −0.377 | +0.178 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 39.53% | −0.267 | −0.056 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.95% | −0.223 | −0.023 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.169 | −0.128 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.231 | −0.117 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 41.17% | −0.265 | −0.021 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 40.84% | −0.276 | −0.013 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.13% | −0.374 | +0.449 | |||||
| CYTBCytochrome b | 1,141 bp | 44.87% | −0.246 | −0.068 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 48.26% | −0.048 | +0.189 | |||||
| 16S rRNA16S ribosomal RNA | 1,677 bp | 44.96% | −0.019 | +0.233 | |||||
| D-loopControl region (D-loop) | 964 bp | 34.03% | −0.159 | +0.016 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU128
UUC101
Leu L16.2%
UUA142
UUG33
CUU121
CUC79
CUA184
CUG58
Ile I7.4%
AUU200
AUC81
Met M4.6%
AUA108
AUG66
Val V6.2%
GUU70
GUC40
GUA99
GUG28
Ser S6.5%
UCU46
UCC60
UCA79
UCG6
AGU20
AGC35
Pro P5.6%
CCU46
CCC58
CCA99
CCG9
Thr T7.7%
ACU56
ACC107
ACA117
ACG12
Ala A9.2%
GCU72
GCC140
GCA123
GCG15
Tyr Y3.1%
UAU64
UAC53
His H2.8%
CAU40
CAC66
Gln Q2.6%
CAA75
CAG23
Asn N3.0%
AAU61
AAC53
Lys K1.9%
AAA57
AAG17
Asp D2.0%
GAU30
GAC47
Glu E2.7%
GAA71
GAG33
Cys C0.7%
UGU13
UGC14
Trp W3.2%
UGA101
UGG20
Arg R2.0%
CGU14
CGC10
CGA40
CGG13
Gly G6.5%
GGU47
GGC39
GGA107
GGG54
Stop 0.2%
UAA3
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_013064.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,018 | 949 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,019 | 1,090 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,767 | 1,677 bp | + | 45.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,768 | 2,842 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,844 | 3,818 | 975 bp | + | 42.4% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,897 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,896 | 3,966 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,968 | 4,036 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,037 | 5,081 | 1,045 bp | + | 46.4% |
| tRNA-Trp | Transfer RNA | 5,082 | 5,154 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,156 | 5,224 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,226 | 5,298 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,330 | 5,395 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,398 | 5,468 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,470 | 7,020 | 1,551 bp | + | 42.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,022 | 7,092 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,095 | 7,168 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 41.0% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,949 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,118 | 168 bp | + | 36.3% |
| ATP6 | Protein-coding gene | 8,109 | 8,791 | 683 bp | + | 39.5% |
| COX3 | Protein-coding gene | 8,792 | 9,576 | 785 bp | + | 44.0% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,647 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,648 | 9,996 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 9,997 | 10,066 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,357 | 11,738 | 1,382 bp | + | 41.2% |
| tRNA-His | Transfer RNA | 11,739 | 11,808 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,876 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,878 | 11,950 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,951 | 13,789 | 1,839 bp | + | 40.8% |
| ND6 | Protein-coding gene | 13,786 | 14,307 | 522 bp | − | 47.1% |
| tRNA-Glu | Transfer RNA | 14,308 | 14,376 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,381 | 15,521 | 1,141 bp | + | 44.9% |
| tRNA-Thr | Transfer RNA | 15,522 | 15,593 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,663 | 71 bp | − | – |
| D-loop | Control region | 15,664 | 16,627 | 964 bp | – | 34.0% |