Etheostoma flabellare
Fantail darter
GC content
44.78%
Whole genome
Non-coding
1,067 bp
D-loop 1,000 bp
Where Fantail darter sits among 2,335 species
Whole-genome GC content against maximum lifespan. Fantail darter has the 2,094th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,656 bp
- GC skew (G − C) / (G + C)
- −0.215
- AT skew (A − T) / (A + T)
- −0.027
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,656 bp
Protein-coding11,407 bp
12S rRNA944 bp
16S rRNA1,690 bp
All tRNA1,548 bp
D-loop1,000 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.92% | −0.292 | −0.155 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.04% | −0.382 | −0.079 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.94% | −0.197 | −0.129 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.84% | −0.223 | −0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 39.29% | −0.424 | +0.020 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.42% | −0.380 | −0.158 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.26% | −0.235 | −0.106 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.84% | −0.255 | −0.296 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.48% | −0.333 | −0.205 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.10% | −0.248 | −0.096 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.12% | −0.304 | −0.065 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.40% | −0.316 | +0.319 | |||||
| CYTBCytochrome b | 1,141 bp | 45.75% | −0.272 | −0.147 | |||||
| 12S rRNA12S ribosomal RNA | 944 bp | 48.73% | −0.057 | +0.194 | |||||
| 16S rRNA16S ribosomal RNA | 1,690 bp | 45.92% | −0.067 | +0.177 | |||||
| D-loopControl region (D-loop) | 1,000 bp | 37.10% | −0.035 | −0.033 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU151
UUC88
Leu L17.2%
UUA116
UUG27
CUU196
CUC120
CUA142
CUG55
Ile I7.2%
AUU185
AUC88
Met M4.0%
AUA100
AUG52
Val V5.8%
GUU84
GUC42
GUA65
GUG28
Ser S6.3%
UCU53
UCC59
UCA59
UCG14
AGU14
AGC42
Pro P5.9%
CCU81
CCC96
CCA42
CCG5
Thr T7.6%
ACU79
ACC99
ACA96
ACG14
Ala A9.5%
GCU76
GCC160
GCA103
GCG21
Tyr Y2.9%
UAU54
UAC56
His H2.8%
CAU47
CAC60
Gln Q2.6%
CAA80
CAG18
Asn N3.1%
AAU60
AAC57
Lys K2.0%
AAA60
AAG15
Asp D2.0%
GAU27
GAC51
Glu E2.6%
GAA58
GAG42
Cys C0.6%
UGU9
UGC14
Trp W3.2%
UGA90
UGG30
Arg R2.0%
CGU11
CGC18
CGA36
CGG11
Gly G6.4%
GGU39
GGC77
GGA72
GGG56
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_042248.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,012 | 944 bp | + | 48.7% |
| tRNA-Val | Transfer RNA | 1,013 | 1,085 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,775 | 1,690 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,776 | 2,849 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,850 | 3,824 | 975 bp | + | 44.9% |
| tRNA-Ile | Transfer RNA | 3,829 | 3,898 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,898 | 3,968 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,968 | 4,036 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,037 | 5,082 | 1,046 bp | + | 47.0% |
| tRNA-Trp | Transfer RNA | 5,083 | 5,153 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,155 | 5,223 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,225 | 5,297 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,336 | 5,401 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,402 | 5,471 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,473 | 7,023 | 1,551 bp | + | 44.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,168 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,177 | 7,867 | 691 bp | + | 42.8% |
| tRNA-Lys | Transfer RNA | 7,868 | 7,941 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,943 | 8,110 | 168 bp | + | 39.3% |
| ATP6 | Protein-coding gene | 8,101 | 8,784 | 684 bp | + | 43.4% |
| COX3 | Protein-coding gene | 8,784 | 9,568 | 785 bp | + | 47.3% |
| tRNA-Gly | Transfer RNA | 9,569 | 9,639 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,640 | 9,988 | 349 bp | + | 43.8% |
| tRNA-Arg | Transfer RNA | 9,989 | 10,057 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,058 | 10,354 | 297 bp | + | 47.5% |
| ND4 | Protein-coding gene | 10,348 | 11,728 | 1,381 bp | + | 44.1% |
| tRNA-His | Transfer RNA | 11,729 | 11,797 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,798 | 11,865 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,871 | 11,943 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,944 | 13,782 | 1,839 bp | + | 43.1% |
| ND6 | Protein-coding gene | 13,779 | 14,300 | 522 bp | − | 45.4% |
| tRNA-Glu | Transfer RNA | 14,301 | 14,369 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,375 | 15,515 | 1,141 bp | + | 45.8% |
| tRNA-Thr | Transfer RNA | 15,516 | 15,587 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,587 | 15,656 | 70 bp | − | – |
| D-loop | Control region | 15,657 | 16,656 | 1,000 bp | – | 37.1% |