Etheostoma radiosum
Orangebelly darter
GC content
46.11%
Whole genome
Non-coding
1,005 bp
D-loop 938 bp
Where Orangebelly darter sits among 2,335 species
Whole-genome GC content against maximum lifespan. Orangebelly darter has the 2,079th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,600 bp
- GC skew (G − C) / (G + C)
- −0.201
- AT skew (A − T) / (A + T)
- −0.042
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,600 bp
Protein-coding11,411 bp
12S rRNA947 bp
16S rRNA1,692 bp
All tRNA1,549 bp
D-loop938 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.39% | −0.221 | −0.201 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 47.76% | −0.320 | −0.137 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.55% | −0.172 | −0.136 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.99% | −0.243 | −0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.441 | +0.040 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.88% | −0.362 | −0.130 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 49.49% | −0.219 | −0.103 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 47.29% | −0.241 | −0.276 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.347 | −0.213 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.05% | −0.239 | −0.119 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.41% | −0.257 | −0.080 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.79% | −0.314 | +0.336 | |||||
| CYTBCytochrome b | 1,141 bp | 47.42% | −0.238 | −0.237 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 48.57% | −0.083 | +0.195 | |||||
| 16S rRNA16S ribosomal RNA | 1,692 bp | 46.16% | −0.068 | +0.170 | |||||
| D-loopControl region (D-loop) | 938 bp | 38.38% | −0.083 | −0.048 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU157
UUC80
Leu L17.2%
UUA92
UUG37
CUU200
CUC125
CUA157
CUG46
Ile I7.0%
AUU187
AUC78
Met M3.8%
AUA72
AUG73
Val V6.1%
GUU77
GUC52
GUA59
GUG43
Ser S6.1%
UCU46
UCC68
UCA48
UCG15
AGU17
AGC38
Pro P6.0%
CCU88
CCC90
CCA33
CCG16
Thr T7.6%
ACU59
ACC114
ACA91
ACG24
Ala A9.6%
GCU83
GCC161
GCA86
GCG36
Tyr Y2.9%
UAU49
UAC62
His H2.8%
CAU43
CAC64
Gln Q2.5%
CAA68
CAG29
Asn N3.0%
AAU48
AAC66
Lys K2.0%
AAA47
AAG28
Asp D2.0%
GAU27
GAC51
Glu E2.7%
GAA62
GAG39
Cys C0.6%
UGU4
UGC19
Trp W3.1%
UGA80
UGG40
Arg R2.0%
CGU18
CGC19
CGA24
CGG17
Gly G6.5%
GGU46
GGC75
GGA63
GGG64
Stop 0.3%
UAA6
UAG4
AGA0
AGG0
Genome map
38 annotated features in NC_005254.2Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,016 | 1,088 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,780 | 1,692 bp | + | 46.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 47.4% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,903 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,088 | 1,047 bp | + | 47.8% |
| tRNA-Trp | Transfer RNA | 5,088 | 5,158 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,160 | 5,228 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,405 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,476 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,028 | 1,551 bp | + | 46.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,029 | 7,099 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,174 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 44.0% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,947 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,949 | 8,116 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,107 | 8,790 | 684 bp | + | 44.9% |
| COX3 | Protein-coding gene | 8,790 | 9,575 | 786 bp | + | 49.5% |
| tRNA-Gly | Transfer RNA | 9,575 | 9,645 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,646 | 9,996 | 351 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,995 | 10,063 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,064 | 10,360 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,354 | 11,734 | 1,381 bp | + | 46.1% |
| tRNA-His | Transfer RNA | 11,735 | 11,803 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,804 | 11,871 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,949 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,950 | 13,788 | 1,839 bp | + | 45.4% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 45.8% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,381 | 15,521 | 1,141 bp | + | 47.4% |
| tRNA-Thr | Transfer RNA | 15,522 | 15,593 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,662 | 70 bp | − | – |
| D-loop | Control region | 15,663 | 16,600 | 938 bp | – | 38.4% |