Etheostoma zonale
Banded darter
GC content
45.80%
Whole genome
Non-coding
996 bp
D-loop 931 bp
Where Banded darter sits among 2,335 species
Whole-genome GC content against maximum lifespan. Banded darter has the 2,096th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,586 bp
- GC skew (G − C) / (G + C)
- −0.213
- AT skew (A − T) / (A + T)
- −0.027
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,586 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,688 bp
All tRNA1,550 bp
D-loop931 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.39% | −0.299 | −0.173 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.47% | −0.396 | −0.050 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.23% | −0.160 | −0.161 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.14% | −0.220 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.86% | −0.389 | +0.083 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.98% | −0.293 | −0.195 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.03% | −0.252 | −0.078 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.71% | −0.276 | −0.280 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.306 | −0.190 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.04% | −0.244 | −0.109 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.59% | −0.288 | −0.097 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.08% | −0.299 | +0.365 | |||||
| CYTBCytochrome b | 1,141 bp | 45.49% | −0.264 | −0.151 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 49.52% | −0.081 | +0.216 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 45.79% | −0.076 | +0.187 | |||||
| D-loopControl region (D-loop) | 931 bp | 37.70% | −0.048 | −0.017 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU148
UUC94
Leu L17.3%
UUA97
UUG30
CUU192
CUC132
CUA149
CUG58
Ile I7.1%
AUU185
AUC86
Met M3.8%
AUA72
AUG74
Val V6.0%
GUU92
GUC39
GUA63
GUG33
Ser S6.3%
UCU40
UCC67
UCA57
UCG17
AGU17
AGC40
Pro P5.8%
CCU79
CCC93
CCA33
CCG17
Thr T7.4%
ACU63
ACC104
ACA90
ACG24
Ala A9.6%
GCU70
GCC176
GCA97
GCG21
Tyr Y2.9%
UAU49
UAC63
His H2.8%
CAU45
CAC61
Gln Q2.5%
CAA73
CAG24
Asn N3.0%
AAU53
AAC62
Lys K2.0%
AAA60
AAG15
Asp D2.1%
GAU26
GAC53
Glu E2.7%
GAA63
GAG39
Cys C0.6%
UGU7
UGC16
Trp W3.2%
UGA84
UGG36
Arg R2.0%
CGU16
CGC15
CGA31
CGG15
Gly G6.4%
GGU47
GGC79
GGA69
GGG50
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_056397.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 49.5% |
| tRNA-Val | Transfer RNA | 1,014 | 1,086 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,774 | 1,688 bp | + | 45.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,775 | 2,848 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,849 | 3,823 | 975 bp | + | 47.4% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,897 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,897 | 3,967 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,967 | 4,035 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,036 | 5,081 | 1,046 bp | + | 48.5% |
| tRNA-Trp | Transfer RNA | 5,082 | 5,152 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,154 | 5,222 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,224 | 5,296 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,335 | 5,400 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,471 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,473 | 7,023 | 1,551 bp | + | 46.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,169 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,177 | 7,867 | 691 bp | + | 44.1% |
| tRNA-Lys | Transfer RNA | 7,868 | 7,941 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,943 | 8,110 | 168 bp | + | 42.9% |
| ATP6 | Protein-coding gene | 8,101 | 8,784 | 684 bp | + | 43.0% |
| COX3 | Protein-coding gene | 8,784 | 9,568 | 785 bp | + | 48.0% |
| tRNA-Gly | Transfer RNA | 9,569 | 9,639 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,640 | 9,988 | 349 bp | + | 46.7% |
| tRNA-Arg | Transfer RNA | 9,989 | 10,057 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,058 | 10,354 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,348 | 11,728 | 1,381 bp | + | 45.0% |
| tRNA-His | Transfer RNA | 11,729 | 11,797 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,798 | 11,865 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,870 | 11,942 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,943 | 13,781 | 1,839 bp | + | 44.6% |
| ND6 | Protein-coding gene | 13,778 | 14,299 | 522 bp | − | 48.1% |
| tRNA-Glu | Transfer RNA | 14,300 | 14,368 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,374 | 15,514 | 1,141 bp | + | 45.5% |
| tRNA-Thr | Transfer RNA | 15,515 | 15,586 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,586 | 15,655 | 70 bp | − | – |
| D-loop | Control region | 15,656 | 16,586 | 931 bp | – | 37.7% |