Etrumeus teres
Red-eye round herring
GC content
44.62%
Whole genome
Non-coding
1,372 bp
D-loop 1,307 bp
Where Red-eye round herring sits among 2,335 species
Whole-genome GC content against maximum lifespan. Red-eye round herring has the 2,220th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,979 bp
- GC skew (G − C) / (G + C)
- −0.218
- AT skew (A − T) / (A + T)
- +0.002
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,979 bp
Protein-coding11,409 bp
12S rRNA955 bp
16S rRNA1,690 bp
All tRNA1,554 bp
D-loop1,307 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.69% | −0.239 | −0.122 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.22% | −0.366 | −0.039 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.23% | −0.146 | −0.110 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.55% | −0.245 | +0.018 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.324 | +0.072 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 42.46% | −0.359 | −0.059 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.73% | −0.192 | −0.080 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.99% | −0.261 | −0.177 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.41% | −0.285 | −0.207 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.68% | −0.293 | −0.031 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 43.71% | −0.304 | −0.018 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 43.37% | −0.380 | +0.405 | |||||
| CYTBCytochrome b | 1,141 bp | 45.31% | −0.261 | −0.099 | |||||
| 12S rRNA12S ribosomal RNA | 955 bp | 48.59% | −0.047 | +0.169 | |||||
| 16S rRNA16S ribosomal RNA | 1,690 bp | 46.86% | −0.076 | +0.227 | |||||
| D-loopControl region (D-loop) | 1,307 bp | 36.11% | −0.263 | −0.073 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU135
UUC107
Leu L16.2%
UUA126
UUG20
CUU155
CUC120
CUA144
CUG51
Ile I7.1%
AUU177
AUC93
Met M4.3%
AUA92
AUG71
Val V6.6%
GUU84
GUC62
GUA85
GUG20
Ser S6.4%
UCU50
UCC64
UCA62
UCG10
AGU15
AGC42
Pro P5.7%
CCU52
CCC82
CCA60
CCG22
Thr T7.8%
ACU77
ACC97
ACA103
ACG18
Ala A9.3%
GCU69
GCC135
GCA132
GCG18
Tyr Y3.0%
UAU44
UAC71
His H2.7%
CAU33
CAC68
Gln Q2.5%
CAA80
CAG17
Asn N3.0%
AAU48
AAC65
Lys K2.0%
AAA59
AAG17
Asp D2.0%
GAU31
GAC44
Glu E2.6%
GAA71
GAG29
Cys C0.7%
UGU10
UGC17
Trp W3.1%
UGA96
UGG23
Arg R2.0%
CGU18
CGC5
CGA42
CGG12
Gly G6.6%
GGU39
GGC65
GGA93
GGG53
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_009583.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,023 | 955 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,024 | 1,095 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,096 | 2,785 | 1,690 bp | + | 46.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,785 | 2,860 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 47.7% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,911 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,911 | 3,981 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,050 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,055 | 5,099 | 1,045 bp | + | 46.2% |
| tRNA-Trp | Transfer RNA | 5,100 | 5,171 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,173 | 5,241 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,242 | 5,315 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,345 | 5,411 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,415 | 5,485 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,487 | 7,037 | 1,551 bp | + | 44.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,108 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,113 | 7,182 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,195 | 7,885 | 691 bp | + | 42.6% |
| tRNA-Lys | Transfer RNA | 7,886 | 7,959 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,961 | 8,128 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,119 | 8,801 | 683 bp | + | 42.5% |
| COX3 | Protein-coding gene | 8,802 | 9,586 | 785 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 9,587 | 9,657 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,658 | 10,006 | 349 bp | + | 45.0% |
| tRNA-Arg | Transfer RNA | 10,007 | 10,076 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,077 | 10,373 | 297 bp | + | 41.4% |
| ND4 | Protein-coding gene | 10,367 | 11,747 | 1,381 bp | + | 44.7% |
| tRNA-His | Transfer RNA | 11,748 | 11,816 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,818 | 11,885 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,886 | 11,957 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,958 | 13,793 | 1,836 bp | + | 43.7% |
| ND6 | Protein-coding gene | 13,790 | 14,317 | 528 bp | − | 43.4% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,387 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 45.3% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,603 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,672 | 70 bp | − | – |
| D-loop | Control region | 15,673 | 16,979 | 1,307 bp | – | 36.1% |