Eucyclogobius newberryi
Tidewater goby
GC content
46.12%
Whole genome
Non-coding
938 bp
D-loop 879 bp
Where Tidewater goby sits among 2,335 species
Whole-genome GC content against maximum lifespan. Tidewater goby has the 2,313th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,523 bp
- GC skew (G − C) / (G + C)
- −0.209
- AT skew (A − T) / (A + T)
- −0.052
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,523 bp
Protein-coding11,412 bp
12S rRNA947 bp
16S rRNA1,676 bp
All tRNA1,552 bp
D-loop879 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.251 | −0.256 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 47.09% | −0.347 | −0.108 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 45.75% | −0.125 | −0.170 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.01% | −0.254 | −0.026 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.82% | −0.536 | +0.083 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.86% | −0.360 | −0.198 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 48.47% | −0.195 | −0.129 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 48.72% | −0.240 | −0.344 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.302 | −0.216 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.73% | −0.269 | −0.155 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.05% | −0.272 | −0.104 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 52.87% | −0.348 | +0.382 | |||||
| CYTBCytochrome b | 1,141 bp | 47.59% | −0.256 | −0.197 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 45.62% | −0.069 | +0.177 | |||||
| 16S rRNA16S ribosomal RNA | 1,676 bp | 46.00% | −0.089 | +0.171 | |||||
| D-loopControl region (D-loop) | 879 bp | 35.84% | −0.079 | +0.021 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU167
UUC81
Leu L17.4%
UUA94
UUG43
CUU222
CUC142
CUA101
CUG61
Ile I6.5%
AUU153
AUC93
Met M4.2%
AUA88
AUG73
Val V6.1%
GUU84
GUC48
GUA58
GUG43
Ser S6.2%
UCU72
UCC54
UCA34
UCG22
AGU10
AGC45
Pro P5.9%
CCU81
CCC96
CCA32
CCG15
Thr T7.5%
ACU58
ACC97
ACA108
ACG24
Ala A9.5%
GCU102
GCC130
GCA95
GCG35
Tyr Y2.9%
UAU46
UAC64
His H2.8%
CAU31
CAC77
Gln Q2.6%
CAA68
CAG31
Asn N3.2%
AAU43
AAC77
Lys K1.8%
AAA41
AAG28
Asp D1.9%
GAU21
GAC50
Glu E2.5%
GAA53
GAG42
Cys C0.7%
UGU8
UGC17
Trp W3.0%
UGA75
UGG40
Arg R2.0%
CGU10
CGC20
CGA31
CGG14
Gly G6.6%
GGU38
GGC106
GGA42
GGG66
Stop 0.2%
UAA4
UAG5
AGA0
AGG0
Genome map
38 annotated features in NC_028288.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,016 | 947 bp | + | 45.6% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,764 | 1,676 bp | + | 46.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,765 | 2,838 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,839 | 3,813 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 3,818 | 3,887 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,887 | 3,957 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,957 | 4,025 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,026 | 5,072 | 1,047 bp | + | 47.1% |
| tRNA-Trp | Transfer RNA | 5,073 | 5,143 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,146 | 5,214 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,216 | 5,288 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,324 | 5,388 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,389 | 5,459 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,461 | 7,014 | 1,554 bp | + | 45.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,015 | 7,085 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,089 | 7,160 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,164 | 7,854 | 691 bp | + | 45.0% |
| tRNA-Lys | Transfer RNA | 7,855 | 7,929 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,931 | 8,095 | 165 bp | + | 41.8% |
| ATP6 | Protein-coding gene | 8,089 | 8,772 | 684 bp | + | 43.9% |
| COX3 | Protein-coding gene | 8,772 | 9,555 | 784 bp | + | 48.5% |
| tRNA-Gly | Transfer RNA | 9,556 | 9,626 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,627 | 9,977 | 351 bp | + | 48.7% |
| tRNA-Arg | Transfer RNA | 9,976 | 10,044 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,045 | 10,341 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,335 | 11,715 | 1,381 bp | + | 48.7% |
| tRNA-His | Transfer RNA | 11,716 | 11,784 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,785 | 11,852 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,857 | 11,929 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,930 | 13,768 | 1,839 bp | + | 44.1% |
| ND6 | Protein-coding gene | 13,765 | 14,286 | 522 bp | − | 52.9% |
| tRNA-Glu | Transfer RNA | 14,287 | 14,355 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,361 | 15,501 | 1,141 bp | + | 47.6% |
| tRNA-Thr | Transfer RNA | 15,502 | 15,573 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,573 | 15,644 | 72 bp | − | – |
| D-loop | Control region | 15,645 | 16,523 | 879 bp | – | 35.8% |