Gadus macrocephalus
Pacific cod
GC content
42.72%
Whole genome
Non-coding
1,007 bp
Including the D-loop
Where Pacific cod sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pacific cod has the 1,045th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,569 bp
- GC skew (G − C) / (G + C)
- −0.211
- AT skew (A − T) / (A + T)
- −0.026
Life history
- Maximum lifespan
- 18 years
- Adult weight
- 12.5 kg
- Female sexual maturity
- 4.1 years
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04023)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
- May be the same species as Gadus ogac.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,569 bp
Protein-coding11,405 bp
12S rRNA952 bp
16S rRNA1,665 bp
All tRNA1,540 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.90% | −0.248 | −0.155 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 41.53% | −0.355 | −0.054 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.26% | −0.174 | −0.114 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.09% | −0.220 | −0.014 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.543 | +0.082 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 38.74% | −0.366 | −0.150 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.82% | −0.203 | −0.125 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.98% | −0.267 | −0.186 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.329 | −0.134 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.22% | −0.252 | −0.113 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.60% | −0.284 | −0.054 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.25% | −0.325 | +0.333 | |||||
| CYTBCytochrome b | 1,141 bp | 42.07% | −0.258 | −0.153 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 45.69% | −0.034 | +0.168 | |||||
| 16S rRNA16S ribosomal RNA | 1,665 bp | 43.84% | −0.066 | +0.168 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU133
UUC100
Leu L17.2%
UUA158
UUG25
CUU182
CUC100
CUA149
CUG40
Ile I6.6%
AUU178
AUC75
Met M4.7%
AUA134
AUG44
Val V6.0%
GUU73
GUC42
GUA87
GUG27
Ser S6.8%
UCU68
UCC48
UCA72
UCG7
AGU24
AGC38
Pro P5.7%
CCU86
CCC78
CCA44
CCG9
Thr T7.7%
ACU84
ACC85
ACA116
ACG9
Ala A9.2%
GCU105
GCC117
GCA118
GCG12
Tyr Y2.9%
UAU64
UAC45
His H2.8%
CAU49
CAC57
Gln Q2.5%
CAA73
CAG21
Asn N2.9%
AAU65
AAC46
Lys K1.9%
AAA56
AAG15
Asp D2.1%
GAU46
GAC33
Glu E2.5%
GAA68
GAG29
Cys C0.7%
UGU16
UGC10
Trp W3.2%
UGA103
UGG17
Arg R2.0%
CGU15
CGC14
CGA29
CGG17
Gly G6.4%
GGU51
GGC81
GGA71
GGG42
Stop 0.2%
UAA4
UAG2
AGA0
AGG1
Genome map
37 annotated features in NC_036931.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 45.7% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,757 | 1,665 bp | + | 43.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,758 | 2,831 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,832 | 3,806 | 975 bp | + | 43.9% |
| tRNA-Ile | Transfer RNA | 3,808 | 3,877 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,877 | 3,947 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,947 | 4,016 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,017 | 5,061 | 1,045 bp | + | 41.5% |
| tRNA-Trp | Transfer RNA | 5,062 | 5,130 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,132 | 5,200 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,203 | 5,275 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,308 | 5,374 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,375 | 5,441 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,443 | 6,993 | 1,551 bp | + | 43.3% |
| tRNA-Ser (UCN) | Transfer RNA | 6,996 | 7,066 | 71 bp | + | – |
| tRNA-Asp | Transfer RNA | 7,070 | 7,137 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,151 | 7,841 | 691 bp | + | 40.1% |
| tRNA-Lys | Transfer RNA | 7,842 | 7,915 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,917 | 8,084 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,075 | 8,758 | 684 bp | + | 38.7% |
| COX3 | Protein-coding gene | 8,758 | 9,542 | 785 bp | + | 43.8% |
| tRNA-Gly | Transfer RNA | 9,543 | 9,612 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,613 | 9,961 | 349 bp | + | 43.0% |
| tRNA-Arg | Transfer RNA | 9,962 | 10,030 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,031 | 10,327 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,321 | 11,701 | 1,381 bp | + | 42.2% |
| tRNA-His | Transfer RNA | 11,702 | 11,770 | 69 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 11,771 | 11,838 | 68 bp | − | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,841 | 11,913 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,914 | 13,752 | 1,839 bp | + | 41.6% |
| ND6 | Protein-coding gene | 13,748 | 14,269 | 522 bp | − | 44.3% |
| tRNA-Glu | Transfer RNA | 14,270 | 14,338 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,343 | 15,483 | 1,141 bp | + | 42.1% |
| tRNA-Thr | Transfer RNA | 15,484 | 15,554 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,629 | 15,698 | 70 bp | − | – |