Galaxiella nigrostriata

Black-stripe minnow

Maximum lifespan

1 yr

AnAge record

mtDNA size

19,017 bp

RefSeq NC_008448.1

GC content

40.09%

Whole genome

Non-coding

3,375 bp

D-loop 881 bp

Where Black-stripe minnow sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black-stripe minnow has the 2,301st longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome19,017 bp

GC skew (G − C) / (G + C): −0.204
AT skew (A − T) / (A + T): −0.038

Life history

Maximum lifespan: 1 year

Lifespan from AnAge · AnAge record

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome19,017 bp

Protein-coding11,480 bp

12S rRNA943 bp

16S rRNA1,670 bp

All tRNA1,552 bp

D-loop881 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Galaxiella nigrostriata genes

ND1NADH dehydrogenase subunit 1	975 bp	25.9%	35.4%	14.3%	24.4%	38.67%	−0.263	−0.154
ND2NADH dehydrogenase subunit 2	1,048 bp	27.8%	33.0%	12.4%	26.8%	39.22%	−0.367	−0.086
COX1Cytochrome c oxidase subunit I	1,551 bp	25.3%	33.5%	18.2%	22.9%	41.14%	−0.113	−0.139
COX2Cytochrome c oxidase subunit II	691 bp	28.4%	31.3%	16.8%	23.6%	40.38%	−0.168	−0.049
ATP8ATP synthase F0 subunit 8	168 bp	29.8%	31.0%	10.7%	28.6%	39.29%	−0.455	−0.020
ATP6ATP synthase F0 subunit 6	683 bp	28.6%	34.0%	12.9%	24.6%	37.48%	−0.313	−0.087
COX3Cytochrome c oxidase subunit III	786 bp	24.9%	33.0%	16.2%	26.0%	42.11%	−0.233	−0.138
ND3NADH dehydrogenase subunit 3	349 bp	26.1%	36.4%	14.3%	23.2%	37.54%	−0.237	−0.165
ND4LNADH dehydrogenase subunit 4L	297 bp	22.2%	34.0%	14.8%	29.0%	43.77%	−0.323	−0.210
ND4NADH dehydrogenase subunit 4	1,458 bp	27.7%	33.5%	14.4%	24.4%	38.82%	−0.258	−0.094
ND5NADH dehydrogenase subunit 5	1,836 bp	29.4%	32.8%	13.3%	24.5%	37.80%	−0.297	−0.056
ND6NADH dehydrogenase subunit 6	522 bp	38.7%	20.7%	11.1%	29.5%	40.61%	−0.453	+0.303
CYTBCytochrome b	1,137 bp	26.8%	34.7%	15.7%	22.8%	38.43%	−0.185	−0.129
12S rRNA12S ribosomal RNA	943 bp	32.1%	22.9%	21.5%	23.4%	44.96%	−0.042	+0.168
16S rRNA16S ribosomal RNA	1,670 bp	33.8%	24.6%	19.8%	21.8%	41.62%	−0.047	+0.159
D-loopControl region (D-loop)	881 bp	31.0%	31.0%	16.6%	21.5%	38.03%	−0.128	0.000

Codon usage

Counts per codon, darker is more frequent

Gene

3,832 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%

UUU187

UUC57

Leu L16.6%

UUA218

UUG27

CUU164

CUC66

CUA129

CUG33

Ile I7.8%

AUU238

AUC60

Met M4.8%

AUA141

AUG44

Val V5.7%

GUU73

GUC32

GUA82

GUG32

Ser S6.9%

UCU79

UCC38

UCA83

UCG5

AGU28

AGC33

Pro P5.7%

CCU63

CCC72

CCA69

CCG13

Thr T7.5%

ACU95

ACC78

ACA106

ACG9

Ala A8.4%

GCU98

GCC111

GCA102

GCG11

Tyr Y3.1%

UAU85

UAC35

His H2.6%

CAU47

CAC51

Gln Q2.7%

CAA85

CAG18

Asn N3.0%

AAU61

AAC53

Lys K2.1%

AAA64

AAG15

Asp D1.9%

GAU36

GAC35

Glu E2.6%

GAA69

GAG31

Cys C0.7%

UGU10

UGC18

Trp W3.1%

UGA102

UGG15

Arg R2.0%

CGU12

CGC16

CGA39

CGG9

Gly G6.3%

GGU56

GGC74

GGA72

GGG39

Stop 0.2%

UAA6

UAG2

AGA0

AGG1

Genome map

38 annotated features in NC_008448.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (40.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Galaxiella nigrostriata (NC_008448.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Gly	Transfer RNA	386	457	72 bp	+	–
ND3	Protein-coding gene	458	806	349 bp	+	37.5%
tRNA-Arg	Transfer RNA	807	876	70 bp	+	–
tRNA-His	Transfer RNA	2,304	2,372	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	2,373	2,440	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	2,442	2,514	73 bp	+	–
ND5	Protein-coding gene	2,515	4,350	1,836 bp	+	37.8%
ND6	Protein-coding gene	4,347	4,868	522 bp	−	40.6%
tRNA-Glu	Transfer RNA	4,869	4,937	69 bp	−	–
CYTB	Protein-coding gene	4,935	6,071	1,137 bp	+	38.4%
tRNA-Thr	Transfer RNA	6,076	6,147	72 bp	+	–
tRNA-Pro	Transfer RNA	6,271	6,340	70 bp	−	–
D-loop	Control region	6,341	7,221	881 bp	–	38.0%
tRNA-Phe	Transfer RNA	7,222	7,289	68 bp	+	–
12S rRNA	Ribosomal RNA	7,290	8,232	943 bp	+	45.0%
tRNA-Val	Transfer RNA	8,233	8,304	72 bp	+	–
16S rRNA	Ribosomal RNA	8,305	9,974	1,670 bp	+	41.6%
tRNA-Leu (UUR)	Transfer RNA	9,975	10,049	75 bp	+	–
ND1	Protein-coding gene	10,050	11,024	975 bp	+	38.7%
tRNA-Ile	Transfer RNA	11,025	11,096	72 bp	+	–
tRNA-Gln	Transfer RNA	11,096	11,166	71 bp	−	–
tRNA-Met	Transfer RNA	11,165	11,233	69 bp	+	–
ND2	Protein-coding gene	11,234	12,281	1,048 bp	+	39.2%
tRNA-Trp	Transfer RNA	12,282	12,351	70 bp	+	–
tRNA-Ala	Transfer RNA	12,353	12,421	69 bp	−	–
tRNA-Asn	Transfer RNA	12,423	12,495	73 bp	−	–
tRNA-Cys	Transfer RNA	12,526	12,589	64 bp	−	–
tRNA-Tyr	Transfer RNA	12,591	12,661	71 bp	−	–
COX1	Protein-coding gene	12,663	14,213	1,551 bp	+	41.1%
tRNA-Ser (UCN)	Transfer RNA	14,214	14,284	71 bp	−	–
tRNA-Asp	Transfer RNA	14,287	14,359	73 bp	+	–
COX2	Protein-coding gene	14,373	15,063	691 bp	+	40.4%
tRNA-Lys	Transfer RNA	15,064	15,137	74 bp	+	–
ATP8	Protein-coding gene	15,139	15,306	168 bp	+	39.3%
ATP6	Protein-coding gene	15,297	15,979	683 bp	+	37.5%
COX3	Protein-coding gene	15,980	16,765	786 bp	+	42.1%
ND4L	Protein-coding gene	17,251	17,547	297 bp	+	43.8%
ND4	Protein-coding gene	17,541	18,998	1,458 bp	+	38.8%