Garra rufa
Red garra
GC content
41.36%
Whole genome
Non-coding
1,182 bp
D-loop 855 bp
Where Red garra sits among 2,335 species
Whole-genome GC content against maximum lifespan. Red garra has the 2,117th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,763 bp
- GC skew (G − C) / (G + C)
- −0.227
- AT skew (A − T) / (A + T)
- +0.085
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,763 bp
Protein-coding11,387 bp
12S rRNA953 bp
16S rRNA1,682 bp
All tRNA1,559 bp
D-loop855 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 41.23% | −0.264 | +0.009 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 40.96% | −0.383 | +0.141 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.07% | −0.156 | −0.055 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 39.36% | −0.250 | +0.079 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 35.76% | −0.458 | +0.113 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 40.12% | −0.292 | −0.032 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.69% | −0.213 | −0.005 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 39.83% | −0.295 | −0.038 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.255 | −0.075 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 40.77% | −0.304 | +0.051 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 38.82% | −0.311 | +0.066 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.416 | +0.474 | |||||
| CYTBCytochrome b | 1,137 bp | 41.78% | −0.284 | −0.003 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 47.64% | −0.075 | +0.226 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 42.27% | −0.069 | +0.294 | |||||
| D-loopControl region (D-loop) | 855 bp | 36.37% | −0.190 | +0.044 |
Codon usage
Counts per codon, darker is more frequent3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU112
UUC113
Leu L16.3%
UUA158
UUG25
CUU101
CUC59
CUA239
CUG39
Ile I7.8%
AUU217
AUC80
Met M4.8%
AUA142
AUG41
Val V5.8%
GUU66
GUC32
GUA97
GUG26
Ser S6.3%
UCU36
UCC57
UCA90
UCG7
AGU13
AGC36
Pro P5.6%
CCU22
CCC61
CCA118
CCG11
Thr T7.8%
ACU49
ACC95
ACA137
ACG16
Ala A8.6%
GCU70
GCC115
GCA135
GCG7
Tyr Y3.1%
UAU69
UAC48
His H2.8%
CAU36
CAC69
Gln Q2.6%
CAA91
CAG8
Asn N3.2%
AAU61
AAC62
Lys K2.1%
AAA69
AAG12
Asp D1.9%
GAU25
GAC49
Glu E2.7%
GAA79
GAG25
Cys C0.7%
UGU7
UGC20
Trp W3.1%
UGA99
UGG20
Arg R2.0%
CGU3
CGC13
CGA47
CGG12
Gly G6.5%
GGU29
GGC50
GGA118
GGG49
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_022941.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,022 | 953 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,776 | 1,682 bp | + | 42.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,777 | 2,852 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 41.2% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,904 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,974 | 4,042 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,043 | 5,087 | 1,045 bp | + | 41.0% |
| tRNA-Trp | Transfer RNA | 5,088 | 5,158 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,160 | 5,228 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,336 | 5,402 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,474 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,026 | 1,551 bp | + | 43.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,027 | 7,097 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,101 | 7,170 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 39.4% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,949 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,951 | 8,115 | 165 bp | + | 35.8% |
| ATP6 | Protein-coding gene | 8,109 | 8,791 | 683 bp | + | 40.1% |
| COX3 | Protein-coding gene | 8,792 | 9,576 | 785 bp | + | 43.7% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,648 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 39.8% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,067 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,358 | 11,738 | 1,381 bp | + | 40.8% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,875 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,949 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,776 | 1,824 bp | + | 38.8% |
| ND6 | Protein-coding gene | 13,773 | 14,294 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,295 | 14,363 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,372 | 15,508 | 1,137 bp | + | 41.8% |
| tRNA-Thr | Transfer RNA | 15,513 | 15,585 | 73 bp | + | – |
| D-loop | Control region | 15,586 | 16,440 | 855 bp | – | 36.4% |
| tRNA-Pro | Transfer RNA | 16,441 | 16,510 | 70 bp | − | – |