Gasterosteus wheatlandi
Blackspotted stickleback
GC content
43.59%
Whole genome
Non-coding
951 bp
D-loop 894 bp
Where Blackspotted stickleback sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blackspotted stickleback has the 2,312th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,538 bp
- GC skew (G − C) / (G + C)
- −0.226
- AT skew (A − T) / (A + T)
- −0.018
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,538 bp
Protein-coding11,411 bp
12S rRNA944 bp
16S rRNA1,688 bp
All tRNA1,549 bp
D-loop894 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.28% | −0.303 | −0.154 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 43.27% | −0.400 | −0.081 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.88% | −0.164 | −0.111 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.98% | −0.266 | −0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.352 | −0.031 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.64% | −0.331 | −0.084 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 45.42% | −0.255 | −0.114 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 43.88% | −0.286 | −0.157 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.352 | −0.171 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.58% | −0.323 | −0.072 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.49% | −0.321 | −0.063 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.59% | −0.361 | +0.331 | |||||
| CYTBCytochrome b | 1,141 bp | 43.03% | −0.291 | −0.117 | |||||
| 12S rRNA12S ribosomal RNA | 944 bp | 47.25% | −0.063 | +0.153 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 44.55% | −0.045 | +0.175 | |||||
| D-loopControl region (D-loop) | 894 bp | 38.26% | −0.111 | −0.007 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU145
UUC98
Leu L16.5%
UUA117
UUG20
CUU218
CUC77
CUA168
CUG30
Ile I7.3%
AUU185
AUC94
Met M4.0%
AUA89
AUG64
Val V6.0%
GUU90
GUC35
GUA83
GUG19
Ser S6.8%
UCU70
UCC66
UCA61
UCG6
AGU12
AGC45
Pro P5.7%
CCU80
CCC65
CCA64
CCG8
Thr T7.6%
ACU71
ACC96
ACA109
ACG14
Ala A9.1%
GCU102
GCC129
GCA106
GCG8
Tyr Y2.9%
UAU51
UAC59
His H2.8%
CAU32
CAC75
Gln Q2.6%
CAA91
CAG7
Asn N3.1%
AAU37
AAC82
Lys K1.9%
AAA56
AAG16
Asp D2.0%
GAU25
GAC51
Glu E2.6%
GAA75
GAG25
Cys C0.7%
UGU9
UGC16
Trp W3.1%
UGA101
UGG17
Arg R2.1%
CGU18
CGC11
CGA45
CGG6
Gly G6.6%
GGU66
GGC58
GGA84
GGG43
Stop 0.3%
UAA8
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_011570.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,012 | 944 bp | + | 47.3% |
| tRNA-Val | Transfer RNA | 1,013 | 1,084 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,085 | 2,772 | 1,688 bp | + | 44.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,773 | 2,846 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,847 | 3,821 | 975 bp | + | 43.3% |
| tRNA-Ile | Transfer RNA | 3,824 | 3,893 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,893 | 3,963 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,963 | 4,031 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,032 | 5,078 | 1,047 bp | + | 43.3% |
| tRNA-Trp | Transfer RNA | 5,077 | 5,146 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,148 | 5,216 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,218 | 5,290 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,325 | 5,390 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,391 | 5,460 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,462 | 7,012 | 1,551 bp | + | 42.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,013 | 7,083 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,083 | 7,159 | 77 bp | + | – |
| COX2 | Protein-coding gene | 7,165 | 7,855 | 691 bp | + | 43.0% |
| tRNA-Lys | Transfer RNA | 7,856 | 7,929 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,931 | 8,098 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,089 | 8,772 | 684 bp | + | 40.6% |
| COX3 | Protein-coding gene | 8,772 | 9,557 | 786 bp | + | 45.4% |
| tRNA-Gly | Transfer RNA | 9,557 | 9,626 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,627 | 9,977 | 351 bp | + | 43.9% |
| tRNA-Arg | Transfer RNA | 9,976 | 10,044 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,045 | 10,341 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,335 | 11,715 | 1,381 bp | + | 42.6% |
| tRNA-His | Transfer RNA | 11,716 | 11,783 | 68 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,784 | 11,851 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,856 | 11,928 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,932 | 13,770 | 1,839 bp | + | 41.5% |
| ND6 | Protein-coding gene | 13,767 | 14,288 | 522 bp | − | 45.6% |
| tRNA-Glu | Transfer RNA | 14,289 | 14,357 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,363 | 15,503 | 1,141 bp | + | 43.0% |
| tRNA-Thr | Transfer RNA | 15,504 | 15,575 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,575 | 15,644 | 70 bp | − | – |
| D-loop | Control region | 15,645 | 16,538 | 894 bp | – | 38.3% |